PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678354042
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARR-B
Protein Properties Length: 626aa    MW: 69075.8 Da    PI: 6.2752
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678354042genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.73e-29211264155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  678354042 211 KPRVVWSVELHQQFVNAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 264
                79*******************.********************************8 PP
2Response_reg65.23e-22311391109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + +++l+++l + +y +v+  + +e  l+ll++++  +D++l D+ mp+mdG++ll+    e ++lp+i+++a ++++ + + +  Ga 
     678354042  31 VLVVDDDLTCLKILEKMLLNCHY-QVTKSSRAETGLKLLRDNKdgYDIVLSDVHMPDMDGFKLLECVGLE-MDLPVIMMSADDSKDVVMKGIIHGAC 125
                   89*********************.***************888889********************99664.48************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l +
     678354042 126 DYLIKPIRMEALKN 139
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.3E-16212608IPR017053Response regulator B-type, plant
SuperFamilySSF521721.85E-3328155IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.0E-3928164No hitNo description
SMARTSM004482.7E-2529141IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.5830145IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-1931139IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.97E-2532144No hitNo description
SuperFamilySSF466893.05E-20208268IPR009057Homeodomain-like
PROSITE profilePS5129410.836208267IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-30210269IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-25211264IPR006447Myb domain, plants
PfamPF002493.7E-8213263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MNLGPTCTAT STDCFKSAEG VPGQFPAGLR VLVVDDDLTC LKILEKMLLN CHYQVTKSSR  60
AETGLKLLRD NKDGYDIVLS DVHMPDMDGF KLLECVGLEM DLPVIMMSAD DSKDVVMKGI  120
IHGACDYLIK PIRMEALKNI WQHVVRRKQQ VLKEREFEHS GSEDGERVQR PSEDADCTSS  180
ANEGNWKSGS KKRKEEDDEA EERDDTSTLK KPRVVWSVEL HQQFVNAVNQ LGIDKAVPKK  240
ILELMNVPGL TRENVASHLQ KYRLYLRRLN LPQPSGIGNT FLGNPDATFG TLSPLHGISV  300
QTLIDQRNIF SFESPKIRFM NGQSQNDSSK QTNLLHGIPT NMDSKQLAAL HQSGQSFGNI  360
NMHIPSQSNQ SSMMMPQMVQ PQLRTQLLNK INSGHVLNLQ SSLPSGVSNA ILGGSGFGNV  420
HLPSYSSVTQ PSNIVDFSRS QRLDLPGSFP LMGNSSRNVA FTCSGTAEEE MESEPKGGSG  480
GVLGANFVAL NELKRNRTGE LDQSSIGPSF ESRQQPSLQV RMDIPTSVVV QPTPSQETKT  540
RISNINHQIT TSVGHGSSSS SSSSRIKAER FPAMGFQNDP FNDQLEGYDL MSALLKQSED  600
ILPGEHEYNL DSFSLDNHPV YRSKAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-21211267157Transcription factor LUX
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678354042
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071400.10.0two-component response regulator ARR2 isoform X2
TrEMBLA0A2G9GU310.0A0A2G9GU31_9LAMI; Two-component response regulator
STRINGEMJ263540.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.21e-127response regulator 1