PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678351859
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 318aa    MW: 35246.6 Da    PI: 8.475
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678351859genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.81.1e-28182241159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++D+y+WrKYGqK+ k++++p++Y+rC s+ +Cpvkkkv+rs ed+++v+ tYegeHnh+
  678351859 182 VKDEYKWRKYGQKVTKDNPCPKAYFRCGSSpNCPVKKKVQRSMEDQSIVVATYEGEHNHP 241
                58*************************8887****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-28174242IPR003657WRKY domain
PROSITE profilePS5081125.683177243IPR003657WRKY domain
SuperFamilySSF1182901.44E-24179242IPR003657WRKY domain
SMARTSM007746.1E-32182242IPR003657WRKY domain
PfamPF031066.7E-23183241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEFSTLLLDT SLQLSLNASP EESQSPNSKT LPSQGLYSDS WDSCVDEVRP PGGLLFSPIS  60
HSLAYSSVDG WMDQRGGLKD RLKKLSEENQ KLTRLLNAMQ ENCNNLSRQL REQTPVSIHS  120
PDRKRKAEPS VITKEDLAFC GETSSSDKGG STKKPREQHE VVSPTISRVF VRTDASDTSL  180
IVKDEYKWRK YGQKVTKDNP CPKAYFRCGS SPNCPVKKKV QRSMEDQSIV VATYEGEHNH  240
PPATNPHEGA PKCTSSSPST FQLTASKHKM SQGESASLPE GQKLFMEKMA STLAKDASFR  300
DALAAAISER FLVHINHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-19167243176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678351859
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082382.11e-67probable WRKY transcription factor 40
TrEMBLA0A2U5HNV44e-68A0A2U5HNV4_SALMI; WRKY transcription factor 1
STRINGXP_010539177.13e-61(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45002242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-55WRKY DNA-binding protein 40