![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678351197 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 205aa MW: 22583.6 Da PI: 8.114 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.5 | 8.9e-07 | 88 | 115 | 4 | 31 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 4 ahnerErrRRdriNsafeeLrellPkas 31 +h+ +Er RR++i +++ L++l+P + 678351197 88 SHSLAERVRREKISERMKLLQSLVPGCH 115 8************************874 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.32E-8 | 82 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.45E-5 | 82 | 122 | No hit | No description |
PROSITE profile | PS50888 | 9.845 | 84 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-8 | 87 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 205 aa Download sequence Send to blast |
MAAASSSFQV HPHRQCPSHL PNSETLQPNT PLLPTAESPL KPAKKRRVSK KPASPSASHS 60 GKSARKDGEE AEKGYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQSL VPGCHKLLSM 120 KLASVNPLPF DFGVDMESFM MRPDQQELNF SMENNASGYQ GTFPISTPLQ QMLAADILPP 180 GSSQSLWEEG DDEELKAAAS DCIFF |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 49 | 65 | KKPASPSASHSGKSARK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678351197 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001311839.1 | 3e-35 | transcription factor bHLH137-like | ||||
Refseq | XP_015068092.1 | 2e-35 | transcription factor bHLH137 | ||||
Swissprot | Q93W88 | 6e-28 | BH137_ARATH; Transcription factor bHLH137 | ||||
TrEMBL | A0A2R6QG74 | 8e-37 | A0A2R6QG74_ACTCH; Transcription factor bHLH137 like | ||||
STRING | Solyc03g097820.1.1 | 1e-34 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4116 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50915.2 | 1e-29 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|