PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678347781
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GeBP
Protein Properties Length: 1374aa    MW: 150702 Da    PI: 8.4207
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678347781genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573107.41e-3310851186197
     DUF573    1 klfqrlwseeDeivlLqGlidfkakt.gk....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93  
                 klfqrlw+++Dei lLqG++d+++++ g+    + ++d++afy++++++ +++++ksqlveK+rrLKkK+++ v++ +sgk+  f+++hdq +fe+s+
  678347781 1085 KLFQRLWTDQDEIELLQGFLDYTTQRcGQygssQHHHDTTAFYDQIRSKFQLDFNKSQLVEKLRRLKKKYRNLVNRFSSGKDYIFKSPHDQLTFEISS 1182
                 579*******************998743355444556************************************************************* PP

     DUF573   94 kiWg 97  
                 kiWg
  678347781 1183 KIWG 1186
                 ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.70.3302.1E-12773IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549283.63E-12772IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010210.411788IPR000504RNA recognition motif domain
SMARTSM003601.6E-7878IPR000504RNA recognition motif domain
PfamPF000769.6E-8970IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3302.7E-1978164IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010216.0479159IPR000504RNA recognition motif domain
SuperFamilySSF549284.82E-3979169IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd123611.02E-3180155No hitNo description
SMARTSM003604.9E-1880155IPR000504RNA recognition motif domain
PfamPF000761.8E-1781150IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3301.1E-23282369IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549284.82E-39293369IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010216.517296369IPR000504RNA recognition motif domain
SMARTSM003601.8E-20297370IPR000504RNA recognition motif domain
PfamPF000763.9E-17298368IPR000504RNA recognition motif domain
CDDcd123621.90E-39298369No hitNo description
SuperFamilySSF540011.96E-67598949No hitNo description
PfamPF004431.0E-45600947IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolase
PROSITE profilePS5023540.361600950IPR028889Ubiquitin specific protease domain
PROSITE patternPS009720601616IPR018200Ubiquitin specific protease, conserved site
PROSITE patternPS009730891909IPR018200Ubiquitin specific protease, conserved site
PfamPF045042.5E-3110871186IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0016579Biological Processprotein deubiquitination
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0036459Molecular Functionthiol-dependent ubiquitinyl hydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1374 aa     Download sequence    Send to blast
MAEGERVKLF VGQVPKQMTE SQLLRMFQES IVANEVNIIK DRVTRASRGC CFLFCPSREE  60
AEKAINIFHD KKTLPGVEHK LFIGMLPKNV SDDEVSALFS KYGIIKELQF LRGSQQTSKG  120
CAFLKFETKE EAVAAIEALN GIHKIEGSTV PLVVKWADTE KERLARKAQK ALSQASSLHT  180
TGIRQRPSLV GALPMSHMPS YNGCSYQGGT MRGLRPGLSP GMSPGKYAVP PANYVGSSYP  240
ALPGVQYPFS YSGGIMSNRS GMSVNSLSPH AANSQSASPS GVGSSSGGQM EGPPGANLFI  300
YHIPQEFGDE ELASAFQRFG RVLSAKVFVD KATGASKCFG FVSYDSPAAA QSAISTMNGY  360
QLGGKKLKIP EQPCQVIVMV TCPVAFSDEL QVDVSYSMKL VLNVQTHQAI RSPHIDRLVN  420
PTSMSRCRPA EKHHQERPNR MPREELKEID KVLLFGSFTE NETRSWISGK KENPCESREK  480
GAVKISSSEA VQPQAIDGSV GGRAFSVQKG KTEPQRNSAT SAFSNAHENG NTSISKSHVE  540
KKVIFGGAGL SRRASDENFV SNLQNSDNIK LNGSNAASPG DVLQNSKRVT GFHGQDVLPC  600
GLINPGNLCF LNATLQALLS CSPFVRLLQE LRSRNLSKAA YPTISAFVDF INEVSVVGGI  660
NVADKDPAVI ETRKSYTPVM FETVLRKFSP DISGNFLGRT RQEDAQEFLS FMMDQMHDEL  720
LKLDGLTVSK STVVSTAEDD GWETIGPKNK SAVTTTQSLI PSELSSIFGG QLRSVVKAKG  780
NKASATVQPF LMLHLDISHE SIHTVEDALH FFSAPETLNE YRTPTSQRAA PVSARKSINI  840
QSLPKILILH LKRFGYGAHG STKLQKAVRF PLELVLHRDL LVSAAVEGRK YELVATITHH  900
GNIASKGHYT ADARRNDGLL WLRFDDASVE AIPRSRVLHD HAYLLFYRQR WVGGGINLGL  960
AFRFRPVGFG LGLVIGPGGA DHETRRFISP EILKPRRVAA MASVAAVAGH GVVFNDDEDL  1020
LDDDDDQISD HDEDDSASSA PLALDGAPST ALVTVAVHGV PDLHHNQQQQ DLFLPESRKP  1080
DESRKLFQRL WTDQDEIELL QGFLDYTTQR CGQYGSSQHH HDTTAFYDQI RSKFQLDFNK  1140
SQLVEKLRRL KKKYRNLVNR FSSGKDYIFK SPHDQLTFEI SSKIWGNANG SAAYRSTGVE  1200
EDDDDLNNPA FISCQNPIPS RIDVNSKAPR PRKRNRAGPV KLEEKMPSHT NYCNVNNIQP  1260
PTVGITPIAA PVLGIGISGP ISTVIEETIK SSLSPVLKEL LGNSSVPSGL FCGHGSGTTS  1320
PLSLCFPGAV AGDKTSDDRW RKQQILELEV FSKRLELVQS QIRDQLQELR FMEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6gh9_A5e-336009507339Ubiquitin carboxyl-terminal hydrolase 15
6gh9_B5e-336009507339Ubiquitin carboxyl-terminal hydrolase 15
6gha_A5e-336009507339Ubiquitin carboxyl-terminal hydrolase 15,Ubiquitin carboxyl-terminal hydrolase 15
Cis-element ? help Back to Top
SourceLink
PlantRegMap678347781
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.16e-55DNA-binding storekeeper protein-related transcriptional regulator