PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678346614
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family B3
Protein Properties Length: 543aa    MW: 61688.3 Da    PI: 6.9365
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678346614genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.61.4e-15441181696
                EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                ++lp +fa++       +   + +ed+sg++W v+l  +  +g+  +t GW  Fv ++++keg+f+vFk+++++ f  vv +
  678346614  44 MYLPPTFARRLvH-LDGQ--GILMEDSSGKQWAVTL--KSVGGSLAFTLGWHMFVLDHDIKEGEFLVFKYIKDRHF--VVAI 118
                89******99953.3233..5***************..999999***************************98888..7766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-1928124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2029124IPR015300DNA-binding pseudobarrel domain
CDDcd100179.54E-1630119No hitNo description
SMARTSM010199.5E-1031122IPR003340B3 DNA binding domain
PROSITE profilePS5086312.94344122IPR003340B3 DNA binding domain
PfamPF023625.0E-1344118IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MARRRLRSDE YATDCVLTQP GQLGSLSEES FFKIMLGEGF PVVMYLPPTF ARRLVHLDGQ  60
GILMEDSSGK QWAVTLKSVG GSLAFTLGWH MFVLDHDIKE GEFLVFKYIK DRHFVVAIYG  120
ISGCERKDFT SQRNKKPMAE TFLGIEIVHD RLHGENTNAK KAKYGKQLPM VQFKEPCMLV  180
RDVPSERDNK RFLLDLSRFE MEKETESNAL RDTENINRLF PEIFPREDVS ALPTKKSFTS  240
IGKALKGALK KCNAETAPKA QICRISEVSR DKPEEDVNLR APTGIACEQY ETADYDFQLF  300
EVDVKPQNSW NKVTAASAME GDHTTVILEC SGMENINTLV QHDVNLEFNE PSVETIHPVL  360
QPQVESRDLH TEVSYFEIKK EKLDKKPFFS GSTHTRHPSG GGDQKLMNRS EDDQVRENAY  420
AQPKQHRKQK DRMLPSVVKT EPRQRFSSCN SSFSAVVKSL FFMVSCNISE EFPSFLHAFE  480
FSCGCCSRLA LHMPFLHRFA GDPSVGRTSS NLVMSAIFAL MRMRMSWFSD SDCGISLWIS  540
EAT
Cis-element ? help Back to Top
SourceLink
PlantRegMap678346614
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.14e-12B3 family protein