PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678346044

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bZIP

Protein Properties

Length: 338aa MW: 38507.9 Da PI: 6.8994

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678346044	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.1	1.9e-13	63	106	2	45
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k+ k+ +r+++NReAAr++R+RKka+++eLe +k L + ++L 678346044 63 KPEKVLKRLAQNREAARKCRLRKKAYVQELESSMKRLIQLQQEL 106 567999*******************************9988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.9E-5	62	123	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.9E-10	63	105	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.266	64	106	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.03E-9	68	109	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.7E-10	68	107	No hit	No description
PROSITE pattern	PS00036	0	69	84	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.2E-24	149	222	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MFCLIPSRSF SQAESLSMKS QCGGDDFKSG IFNSSPLPME LDSRSDNQSN DVSHSKDKQH 60 TAKPEKVLKR LAQNREAARK CRLRKKAYVQ ELESSMKRLI QLQQELDTAE QQGCGSLEVY 120 QQIPYTGSNF AAFETEYGRW LEEQNKRTSD LRNALFLDIG DEELGVLVEN AMKHYLDLFS 180 MKASAAKADA LYIMLGMWRT SVERFFFWIG GFRPSLILKV LSPQLEPLLE EQRFDISCLR 240 QSCYQAEDAL SKGMDKLRQM VADTVSGGWE INAAVERMEG LVRVLSQADH LRQETLQQIS 300 KILTTRQTAR GLLVLGDYIQ RIQCLSLLWS TTQGTGFW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678346044

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097615.1	1e-124	TGACG-sequence-specific DNA-binding protein TGA-1A isoform X2
Refseq	XP_011097616.1	1e-124	TGACG-sequence-specific DNA-binding protein TGA-1A isoform X3
Swissprot	P14232	1e-106	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
Swissprot	Q39237	1e-106	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A2Z7BU85	1e-121	A0A2Z7BU85_9LAMI; Uncharacterized protein
STRING	XP_006464304.1	1e-116	(Citrus sinensis)
STRING	XP_006428094.1	1e-116	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-104	bZIP family protein

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]