![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678345503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 333aa MW: 37386.7 Da PI: 6.6825 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105 | 3.9e-33 | 169 | 227 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCts++C vkk+vers+ed ++v++tYeg+H+h+ 678345503 169 LDDGYRWRKYGQKGVKNSPFPRSYYRCTSTSCGVKKRVERSSEDRSIVITTYEGTHTHP 227 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-34 | 154 | 229 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-29 | 161 | 229 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.295 | 164 | 229 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 169 | 228 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.7E-27 | 170 | 227 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 333 aa Download sequence Send to blast |
MDEKRKENSD EFSSELDQIQ MMMMIPEASS FSMAEEGSFY GDRDTKGSLG FLDMLSSHDF 60 ASSHSTFDDL LQNVTTHMIL PEPPPQLPVS AATEYSEVFN APATPNSSNS ASSSTNEGVG 120 EGDRKTRNTG DEDESQDKIK KLLGVKKKNQ KRQREPRFAF MTKSEVDHLD DGYRWRKYGQ 180 KGVKNSPFPR SYYRCTSTSC GVKKRVERSS EDRSIVITTY EGTHTHPCPI MPRGAFGLLS 240 ESAAFSASRI GEGAYPSSQL VMPQTHHIQQ QMKNATQQRV PPYIPTLNPQ LSFSDRNPAF 300 HERPFRPPAS SMERDHGLLE DMLPSKIMKD PSV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-25 | 162 | 229 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-25 | 162 | 229 | 10 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00069 | PBM | Transfer from AT2G47260 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678345503 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100744.2 | 6e-88 | probable WRKY transcription factor 48, partial | ||||
TrEMBL | A0A2G9I0G1 | 2e-89 | A0A2G9I0G1_9LAMI; Uncharacterized protein | ||||
STRING | VIT_05s0077g00730.t01 | 5e-77 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1309 | 24 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G49520.1 | 3e-48 | WRKY DNA-binding protein 48 |