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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678343983 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ARF | ||||||||
Protein Properties | Length: 680aa MW: 74368.9 Da PI: 7.0314 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.5 | 6.2e-24 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g+ W++++iyr++++r++lt+GW+ Fv+ + L +gD++vF+ + +++ l+ 678343983 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldynADPPVQ--TIIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNHKSLVAGDSIVFM--RAENGDLC 207 89****************************996445444..8************************************************..4488999* PP EEEE-S CS B3 94 vkvfrk 99 v+++r+ 678343983 208 VGIRRA 213 ***997 PP | |||||||
2 | Auxin_resp | 109.4 | 3.6e-36 | 273 | 356 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fev+Y+Prast+eF+vk+++v+ al++ +s+GmRfkmafetedss++++ +Gt+++v+ +dp+ Wp+S+Wr+L+ 678343983 273 AATLAASGQPFEVIYYPRASTPEFCVKASQVKVALQICWSPGMRFKMAFETEDSSRISWfMGTISSVKVADPILWPDSPWRLLQ 356 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-37 | 104 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.97E-29 | 107 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.14E-21 | 111 | 212 | No hit | No description |
SMART | SM01019 | 9.1E-22 | 112 | 214 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.169 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-21 | 112 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.5E-32 | 273 | 356 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 16.388 | 592 | 680 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence Send to blast |
MESKEEHCLD SQLWHACAGS MVQMPCVNSS VFYFPQGHSE HASGYVDFRK CPRVPAYIPC 60 RVSAVKFLAD RETDEVFAKI RLVPLNGNES GFDGNEVATV SGSGNQDKAT SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYNADPPVQ TIIAKDVHGE IWKFRHIYRG TPRRHLLTTG 180 WSTFVNHKSL VAGDSIVFMR AENGDLCVGI RRAKKGIGSG LEMPTWWNSA CGNSGMQCGG 240 ISAFLGDDEG KLSRHDESWI NRGRVKAEDV VQAATLAASG QPFEVIYYPR ASTPEFCVKA 300 SQVKVALQIC WSPGMRFKMA FETEDSSRIS WFMGTISSVK VADPILWPDS PWRLLQVSWD 360 EPDLLQNVKR VSPWLVELVS NVHGIPFSFS HPGKKIRLPH QEFPLGGQIF MPSFSSQHLL 420 RPNNIFGCVP ISSPPAGMQG ARHAQYGFPA SYFQQPKQPS AISSACFMTL DSCPLSSEAL 480 NPVVPIHGRD ENISCLLSMG NSAQQCTKSD DSKSPSAPTT ASFVLFGQPI LTDNKLSHGC 540 LNDAASPTPT SNSSSDNKFG NTSDGSGFAL YQNNAQALSA SASPSPCEGQ TDGLCKVFLE 600 SDDVGRTVDL SSVGCYEELQ SKLQDLFRIE AQRTSNLVVY RDATGAIRKL GDEPFGTFMR 660 SARRLTILAE PPRNNINLRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-80 | 9 | 377 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678343983 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094651.1 | 0.0 | auxin response factor 18 | ||||
Refseq | XP_011094652.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A2G9GAL7 | 0.0 | A0A2G9GAL7_9LAMI; Auxin response factor | ||||
STRING | Solyc09g007810.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA592 | 24 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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