PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678342908

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

TALE

Protein Properties

Length: 547aa MW: 61065.9 Da PI: 8.015

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678342908	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.2	1.6e-09	393	430	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++++ L++++gL+++qV++WF N R + 678342908 393 FEHflHPYPTEADKHLLSRQTGLSKNQVSNWFINARVR 430 664459******************************88 PP
2	BELL	81.4	1.2e-26	266	323	14	71
BELL 14 slleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 l ++V++rY +y+eq+q++++ F++v+g g+a+pYt+lA+ka+SrhFrc+kdai++ 678342908 266 VLSDKVEERYMRYCEQMQALVNWFDCVVGRGAAAPYTELAQKAMSRHFRCMKDAISNE 323 5789***************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.2E-34	155	322	IPR006563	POX domain
Pfam	PF07526	4.3E-39	161	321	IPR006563	POX domain
PROSITE profile	PS50071	12.357	371	434	IPR001356	Homeobox domain
SMART	SM00389	5.8E-9	374	438	IPR001356	Homeobox domain
CDD	cd00086	2.82E-11	374	435	No hit	No description
SuperFamily	SSF46689	3.94E-17	375	442	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-28	377	440	IPR009057	Homeodomain-like
Pfam	PF05920	7.0E-18	391	430	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MNKQVEWMVK EQELDLPTWG FGDAAAAAEF VAPPQSMVVG DHQIQSSFIW SQKQQLSAAV 60 NGAAVELVQT SADPQLQGHH LNGGPYSPSS IAGASQFGWI SGEDGLRAGR IMETQGLSLS 120 LSSSLRSIEA NKLHRINVGH NELYHRSHGL GVSNYAFTSF LRSSRYLRPA QELLLEICSV 180 GRVQFKRSKF DSHDKNPNQP SGAPASSTPP PLKDRHSLWP SERTEYQRRK IKLLSMFDEL 240 SIFTFSSQTA TRSIVVTAKE SQKNAVLSDK VEERYMRYCE QMQALVNWFD CVVGRGAAAP 300 YTELAQKAMS RHFRCMKDAI SNELKSACLL LGEKDVAGSR GLTKGETPRL KMLEQRYRQQ 360 KSIQQMGVLD PESWRPQRGL PERSVNILRS WLFEHFLHPY PTEADKHLLS RQTGLSKNQV 420 SNWFINARVR LWKPMVEEMY QRELQEVHHE AAAGDIHEAT APNPPTHSSN INGTESDPTA 480 VIDIGHQEPP PSFGEIPAFF APAGQIGGGG GITRAAGEVS LTLELRHKEN LPNVTMRQLT 540 SRDFEAF

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MNKQVEWMVK EQELDLPTWG FGDAAAAAEF VAPPQSMVVG DHQIQSSFIW SQKQQLSAAV  60
NGAAVELVQT SADPQLQGHH LNGGPYSPSS IAGASQFGWI SGEDGLRAGR IMETQGLSLS  120
LSSSLRSIEA NKLHRINVGH NELYHRSHGL GVSNYAFTSF LRSSRYLRPA QELLLEICSV  180
GRVQFKRSKF DSHDKNPNQP SGAPASSTPP PLKDRHSLWP SERTEYQRRK IKLLSMFDEL  240
SIFTFSSQTA TRSIVVTAKE SQKNAVLSDK VEERYMRYCE QMQALVNWFD CVVGRGAAAP  300
YTELAQKAMS RHFRCMKDAI SNELKSACLL LGEKDVAGSR GLTKGETPRL KMLEQRYRQQ  360
KSIQQMGVLD PESWRPQRGL PERSVNILRS WLFEHFLHPY PTEADKHLLS RQTGLSKNQV  420
SNWFINARVR LWKPMVEEMY QRELQEVHHE AAAGDIHEAT APNPPTHSSN INGTESDPTA  480
VIDIGHQEPP PSFGEIPAFF APAGQIGGGG GITRAAGEVS LTLELRHKEN LPNVTMRQLT  540
SRDFEAF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	6e-16	380	438	5	63	Homeobox protein Meis2
3k2a_B	6e-16	380	438	5	63	Homeobox protein Meis2
4xrm_A	7e-16	380	438	5	63	Homeobox protein Meis2
4xrm_B	7e-16	380	438	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678342908

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074481.1	1e-142	BEL1-like homeodomain protein 4
Swissprot	Q94KL5	1e-108	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	A0A2G9G0C1	1e-146	A0A2G9G0C1_9LAMI; Transcription factor MEIS1
STRING	XP_009614985.1	1e-131	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6072	17	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-108	BEL1-like homeodomain 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]