PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678342635
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 89aa    MW: 10353.7 Da    PI: 7.6871
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678342635genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-081154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +W+     ++ da +++ ++   +W+ Iar++  g+++++++ ++
        678342635 11 SWSVMQNRQFEDALAKFDKEtpdRWHNIAREVA-GKSPEDVRRHY 54
                     7*****************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.0E-8860IPR001005SANT/Myb domain
SuperFamilySSF466893.04E-111065IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-51164IPR009057Homeodomain-like
PfamPF002499.9E-61154IPR001005SANT/Myb domain
CDDcd001675.78E-61857No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MASSSVASSR SWSVMQNRQF EDALAKFDKE TPDRWHNIAR EVAGKSPEDV RRHYEALEKD  60
IMKIETDQVP IPNYRTVPKV GIEQRYSML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-26377276RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678342635
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083673.14e-35protein RADIALIS-like 3
SwissprotQ1A1732e-27RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2G9H6D01e-33A0A2G9H6D0_9LAMI; Uncharacterized protein
STRINGMigut.N00487.1.p1e-33(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.19e-26RAD-like 6