![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678342189 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 380aa MW: 42702.5 Da PI: 5.9369 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.7 | 7.5e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++e++ +C+++ lC +C + H+ H++ 678342189 4 LCDFCKEQRSLVYCRSDAARLCLSCDRHVHSAnglsmrHSR 44 7*****************************65677777766 PP | |||||||
2 | zf-B_box | 18.7 | 3.5e-06 | 46 | 89 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Htv 39 C++++++++ C +++ lC++C H++ Ht+ 678342189 46 LLCEKCQSQPAVVRCIEDKLSLCQNCNWDVHSStdvaehkrHTI 89 57************************887775566666222555 PP | |||||||
3 | CCT | 65.4 | 1.6e-22 | 323 | 366 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ allRYkeK+k RkF+KkirY+sRK++A+ R+RvKGrFvk+ 678342189 323 RDDALLRYKEKKKLRKFDKKIRYASRKVRADIRKRVKGRFVKSG 366 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.712 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.2E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.39E-6 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.328 | 43 | 89 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.1E-6 | 46 | 89 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.35E-4 | 47 | 77 | No hit | No description |
Pfam | PF06203 | 5.0E-17 | 323 | 365 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.2 | 323 | 365 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 380 aa Download sequence Send to blast |
MGKLCDFCKE QRSLVYCRSD AARLCLSCDR HVHSANGLSM RHSRTLLCEK CQSQPAVVRC 60 IEDKLSLCQN CNWDVHSSTD VAEHKRHTIN CYSGCPSSAE FSNIWSFFSV DRDHSRLDPG 120 QEDDIPALCQ SHSDDYDKKN AAMGAVASDT GQRCGRKDSS SSKAYSSSTK HSGSVYDSLY 180 DELDFPDVDL SLDDCEGFLD DPLPYSETSE LGSLPEFGNF NDIEESLEKL NPMKLQDDSI 240 SNNETMFWSC NNITLSTDSI SCCKSDSRSP FEAPSQSAIS RSFSGPVPEL VLADHHENVW 300 PYMDVATKGT PLPSNQTPSS ACRDDALLRY KEKKKLRKFD KKIRYASRKV RADIRKRVKG 360 RFVKSGDPYD YDPLHLILNQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678342189 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095879.1 | 1e-101 | zinc finger protein CONSTANS-LIKE 10 isoform X1 | ||||
TrEMBL | A0A2G9G438 | 1e-112 | A0A2G9G438_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1270 | 24 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-63 | B-box type zinc finger protein with CCT domain |