PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678341464

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 367aa MW: 40653 Da PI: 9.6697

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678341464	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	145	168	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C dCg++F +++L+ H + H 678341464 145 FPCLDCGEMFMKSEYLELHHAVrH 168 89*****************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.12	145	173	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	147	168	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.90.228.10	5.7E-12	170	365	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain
SuperFamily	SSF56399	2.4E-18	170	365	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MAKRRTLAKS TKHQLSSNKK PPAWAAVRSL FTCKYLLQVE NQPRLHESKR IKECKKYKCS 60 DSLCTKTEDV AQRLDLLREA KKRSDGPNRC SSSSSSASVG TPIFGSSPCF VGAPFRRLSG 120 CRECKAVVDP VHVMTRDPSL KNAIFPCLDC GEMFMKSEYL ELHHAVRHAV TELGPDDTTK 180 NIVEIIFQSS WVKKNAPLCK IDRILKVQNT TRTLRKFEEY RESIKAKATK LPNKHPRCIA 240 DGNELLRFHG GAVKCSLGLN GSSSLCSSIP SCAVCSVIRY GFRAISSFSS KCGILTTGTS 300 VSAHDRCTAA EDGKRAMLVC RVIAGRVKKS RDGSSEDYDS VSFSSDELYV FNPRAILPCF 360 VVIYTVC

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MAKRRTLAKS TKHQLSSNKK PPAWAAVRSL FTCKYLLQVE NQPRLHESKR IKECKKYKCS  60
DSLCTKTEDV AQRLDLLREA KKRSDGPNRC SSSSSSASVG TPIFGSSPCF VGAPFRRLSG  120
CRECKAVVDP VHVMTRDPSL KNAIFPCLDC GEMFMKSEYL ELHHAVRHAV TELGPDDTTK  180
NIVEIIFQSS WVKKNAPLCK IDRILKVQNT TRTLRKFEEY RESIKAKATK LPNKHPRCIA  240
DGNELLRFHG GAVKCSLGLN GSSSLCSSIP SCAVCSVIRY GFRAISSFSS KCGILTTGTS  300
VSAHDRCTAA EDGKRAMLVC RVIAGRVKKS RDGSSEDYDS VSFSSDELYV FNPRAILPCF  360
VVIYTVC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678341464

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022964469.1	1e-136	uncharacterized protein LOC111464480
TrEMBL	A0A2G9H645	1e-133	A0A2G9H645_9LAMI; Uncharacterized protein
STRING	XP_009366983.1	1e-131	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10723	15	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-65	C2H2-like zinc finger protein