PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678340527
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 366aa    MW: 40765.3 Da    PI: 9.5314
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678340527genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-0581103123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+k F r  nL+ H r H
  678340527  81 FVCEVCNKGFQRDQNLQLHRRGH 103
                89*******************88 PP
2zf-C2H213.30.00024157179123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k++  +s+ k H + +
  678340527 157 WKCEKCSKVYAVQSDWKAHSKIC 179
                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.05E-780103No hitNo description
Gene3DG3DSA:3.30.160.607.2E-680103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.5E-581103IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9781103IPR007087Zinc finger, C2H2
SMARTSM003550.02181103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355120122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.05E-7152177No hitNo description
SMARTSM00355120157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MELDSCSSVM FPAVMLPHIP QETAVSSSAA PRLQHFNPQP LSQSPSSDHK AKKKRNQPGN  60
PDPEAEVIAL SPRTLLATNR FVCEVCNKGF QRDQNLQLHR RGHNLPWKLK QRSSKENKKR  120
AYVCPEPTCV HHHPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKVYAVQS DWKAHSKICG  180
TREYRCDCGT LFTRKDSFIT HRAFCDALAE ESARLSAVLP ENTNFVPGGS QSMHFKPAAS  240
PLIQCWPPTL TQNLQNQFQI KHENLSWNLQ PGSLHLPGVP PPISATALLQ KAATVGPAAA  300
HLSSAAANLH MHAWNISNGF TRDFLGLAVE QYPGRRTDNE AVREFLPFNG GVNAYGANCT  360
ETWRNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36153222372Zinc finger protein JACKDAW
5b3h_F3e-36153222372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678340527
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082586.11e-136protein indeterminate-domain 12
SwissprotO227591e-111IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A4D9A7Y81e-126A0A4D9A7Y8_SALSN; Uncharacterized protein
STRINGEOX946361e-124(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-112indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]