PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678340482
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 286aa    MW: 31272.1 Da    PI: 8.8039
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678340482genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.91.8e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l  +v+++G g Wk I +          R+  ++k++w+++
        678340482  5 KQKWTSEEEEALRAGVAKHGAGKWKNIQKDPEfnhflFARSNIDLKDKWRNL 56
                     79*****************************999**977**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.056161IPR017930Myb domain
SuperFamilySSF466891.44E-15258IPR009057Homeodomain-like
SMARTSM007171.9E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-14456IPR009057Homeodomain-like
PfamPF002491.4E-8556IPR001005SANT/Myb domain
CDDcd116603.54E-21656No hitNo description
SMARTSM005261.1E-9117182IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467854.35E-13119193IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.008119188IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.9E-13120189IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.1E-9122186IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQKDPEFNHF LFARSNIDLK DKWRNLSVAS  60
GQGQRDKSKA HKAKANAAEA PAIPAPAPQI STSVAAMPLN ASGDALAQEA PRSFPEGNNT  120
AKYNAVIYEA LTSLNEENGA ECSAIAAFIE QKQEVPPNFK RLLSSKLRRL VQQNKLEKVQ  180
TNSYRLKRDT GNSRSISMAP SEPLPQQVPT GYSLQAIGGH NEETTEHAAI SAAHRIAEAE  240
NKSFVAAEAT KEAERVSRMA DDQNVLFAFC IECLKQSTHG DVLLRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678340482
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078025.11e-125telomere repeat-binding factor 4
TrEMBLA0A2G9HZM41e-119A0A2G9HZM4_9LAMI; Uncharacterized protein
STRINGMigut.L01522.1.p1e-100(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-45MYB_related family protein