PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678338308 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | bHLH | ||||||||
Protein Properties | Length: 96aa MW: 10605 Da PI: 9.3068 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.7 | 1.6e-06 | 22 | 65 | 14 | 55 |
HHHHHHHHHHHCTSCC.C...TTS-STCHH...HHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPk.askapskKlsKae...iLekAveYIksLq 55 d+i + +++L +llP+ + +s++ +Ka+ +L A++YIk+Lq 678338308 22 DQIVDLLSKLHRLLPEmR--SNSRRSNKAAankVLGDACNYIKELQ 65 578899**********88..47777888854449***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.445 | 8 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.9E-8 | 22 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-7 | 23 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MSGRRSRMST SSSSGAARIT DDQIVDLLSK LHRLLPEMRS NSRRSNKAAA NKVLGDACNY 60 IKELQKEVDD LSERLSQLLS TVDAESQEAA IIRSLI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678338308 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233358.1 | 1e-37 | transcription factor PRE6 isoform X2 | ||||
Refseq | XP_015065156.1 | 1e-37 | transcription factor PRE6 | ||||
Swissprot | Q9LJX1 | 1e-30 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | A0A2G9I4F9 | 2e-38 | A0A2G9I4F9_9LAMI; Uncharacterized protein | ||||
STRING | Solyc02g067380.2.1 | 4e-37 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA353 | 24 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39860.1 | 3e-28 | bHLH family protein |