PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678337595
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 309aa    MW: 34401.4 Da    PI: 9.7716
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678337595genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.7e-065981123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  678337595 59 FVCEICNKGFQRDQNLQLHRRGH 81
               89*******************88 PP
2zf-C2H212.90.00033135157123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k +  +s+ k H +t+
  678337595 135 WKCNKCSKIYAVQSDWKAHSKTC 157
                58*****************9998 PP
3zf-C2H210.90.0014165183523
                TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                dCg+ Fsrk+++ +H   +
  678337595 165 DCGTIFSRKDSFITHRAFC 183
                8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-65881No hitNo description
Gene3DG3DSA:3.30.160.609.0E-65881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0175981IPR015880Zinc finger, C2H2-like
PfamPF121714.4E-55981IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9495981IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355310100130IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-4123156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.39E-6130155No hitNo description
SMARTSM00355170135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MFTPLIPNPA AVSVMHLQQN PPPPPPLPPK KKRSLPGNPD PDAEVIALSP RTLMATNRFV  60
CEICNKGFQR DQNLQLHRRG HNLPWKLKQK SSNKERKKAY VCPEPSCIHH HPSRALGDLT  120
GIKKHYCRKH GEKKWKCNKC SKIYAVQSDW KAHSKTCGTR EYRCDCGTIF SRKDSFITHR  180
AFCEALAEES ARLSAATNSI LTVDHPLHFS GNHISFPEPL HLSPENQIKL AIPYTHILGS  240
TFHVAAPGLS AATILHKAAG TGPVSRSDGF TRDFLGLASQ HSTLCDVDLK NHGFGFNETN  300
WPANPTAFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36131199371Zinc finger protein JACKDAW
5b3h_F3e-36131199371Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18597KLKQKSSNKERKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678337595
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082586.11e-117protein indeterminate-domain 12
SwissprotO227591e-112IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A4D9A7Y81e-127A0A4D9A7Y8_SALSN; Uncharacterized protein
STRINGGorai.008G002200.11e-114(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-103indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]