PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

678336706

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

MYB_related

Protein Properties

Length: 217aa MW: 23717 Da PI: 10.3321

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678336706	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.2	3.7e-13	64	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I++ k+Rt+ q+ s+ qky 678336706 64 PWTEEEHKLFLIGLRRVGKGDWRGISKNYVKTRTPTQVASHAQKY 108 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.987	57	113	IPR017930	Myb domain
SuperFamily	SSF46689	5.08E-17	58	112	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.2E-16	60	111	IPR006447	Myb domain, plants
SMART	SM00717	1.4E-7	61	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.8E-10	64	108	IPR009057	Homeodomain-like
Pfam	PF00249	8.3E-11	64	108	IPR001005	SANT/Myb domain
CDD	cd00167	3.78E-9	64	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MSTGAREILL FGVRLNVDPM RKCVSMNNLS EYEEIPPKDA SAASADDFAP LSAGGARGRK 60 RGIPWTEEEH KLFLIGLRRV GKGDWRGISK NYVKTRTPTQ VASHAQKYFL RHSINVHHRR 120 RRRSSLFDMI AETVISNGDG KNQQKGVGAT PPPPPVTGNI TGIPVAVPIP HALLICPAAS 180 TTETEDPKIK QTEQHQQQPL SLSLSLSSAQ DQIISVG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678336706

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071772.1	2e-50	transcription factor MYB1R1
TrEMBL	A0A4D8YFX1	1e-54	A0A4D8YFX1_SALSN; Uncharacterized protein
STRING	XP_010532298.1	3e-48	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	4e-43	MYB_related family protein