PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678336376
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 371aa    MW: 40125.7 Da    PI: 7.6649
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678336376genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12298343655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+el P+     +k  s a++L +AveYIk+Lq
  678336376 298 SIAERMRRTRISERMKKLQELFPNM----DKQTSTADMLDLAVEYIKDLQ 343
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.723292342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-16295354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.74E-13296347No hitNo description
Gene3DG3DSA:4.10.280.101.0E-14297355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13298348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9298343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MFSLGTVAGD MSNSSSFGGS QSSKHMEMEF AKSREFMGSD FFHQSPGLAR YRSAPSSFLG  60
ALLDSPADNS SSGDESDAAL LSSIWTGPRD LNHKVGGVGS DDSQYHMKQE IGAASGLSSY  120
ETTPAVCSGG TVLGSDSVGF EAQVQVRLNG GNGITGSHLI RQSSSPAGFF NGFGVSSSHL  180
SFSSSAASSS PRMMPSIPEN GHTDASERNG AYSHEAWSDS MIGELKRGRD GHLKMFSALN  240
EMQSQYGETF KSLTHHLSLP RALNERGEPE KFKFLQFQPD VVPCQIRAKR GCATHPRSIA  300
ERMRRTRISE RMKKLQELFP NMDKQTSTAD MLDLAVEYIK DLQRQVQTLS EAKARCVCSS  360
AKTTAETSKG K
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678336376
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087339.11e-124transcription factor bHLH130
TrEMBLA0A2G9FZD61e-123A0A2G9FZD6_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000650292e-92(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44352238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-56bHLH family protein