PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678336030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRAS | ||||||||
Protein Properties | Length: 836aa MW: 90834.5 Da PI: 6.0214 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 318.2 | 1.7e-97 | 477 | 835 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +v++L+++Ae +sg+l la+ +Larl+++ sp+g+p+qR+a+y +eAL+ l+ +++++ + ++ +s+ + + ++aa+k f e+sP+ +f ++t+Nq 678336030 477 MVDQLYKAAELAQSGNLVLADGILARLNHQLSPNGKPFQRAAFYCKEALQLLLHCTSNNMDD-PSSACSSPISFIYKIAAYKSFLEISPLGQFVNFTCNQ 575 5789*************************************************995555554.4555555577999************************ PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 a+lea+eg +r+Hi+Dfdi++G+ W++Llq+La R++gppsl+iT+++sp+++++ el t+e L +fA+e++v++ef+v+ +++ l+ + + ++E 678336030 576 ALLEALEGFDRIHIVDFDIGYGGLWASLLQELAVRSGGPPSLKITAMASPSAHNQLELGLTRESLIQFANEINVSLEFEVM---SVDLLSSGSWLLPENE 672 ********************************************************************************6...67777777777899** PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 a+aVnl + +l d + s++ vL++vk+l Pk+v v+ + +++ sF++++++al+ ys l++sl+a +++++ +k+E++ll++ i+ + + 678336030 673 AVAVNLPV--GSLADYQFSMPL----VLRFVKQLAPKIVLSVDGGCYRTDLSFANHVIHALQSYSNLLESLDAA-NAHTDALQKIEKFLLQPGIERIMTG 765 ******99..556655677776....*********************************************887.5677999**************9987 PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + ++ e+ ++Wr++ +aGF+pv++s+ a++qa++++++++++g+++e+++ sl+l+W++++L+s+SaW+ 678336030 766 RFRS----PEKTQHWRSMALAAGFSPVAFSNLAESQAECIIKRFPVRGFQIEKRQSSLFLCWQRKELISASAWK 835 7666....9****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.079 | 451 | 815 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.8E-95 | 477 | 835 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 836 aa Download sequence Send to blast |
MLLRSLRPPE RQRISAAPSF QTITKSLLPS STTMSDSSNL CRTPLASYSR NRHFFPITIK 60 LELSPGPRIP PPPTDVIMSV YPGRMKGMPL SFEFEGRGVL DLELIVKNRG FFGDSGVCCV 120 DLAERNCLFS GFGEPTSVLD PVRPTSSSNL SSSLGGAGGV CRAGSADTAG VAAVSEANPN 180 SKWQQDSTTA TSSNVGRIDS GFVPVAPSPE IGPPAGGSSE KFSMEDWESV LSESAAVSPT 240 QEQDILRWIM GDVEEPALGN PNNGDVFPAG ESEFSGGYTA ADQAFGGENP LTTSFISTLP 300 IYPSNSRSSS DKIGMAGNFK CSPNSQSIVH PCNNSGSVPV HHQTSFDYCT DIKPPFFGSS 360 LLANQPSQNP PLFSLSFSEG QQQSMLHLPP PKRHNSGGPE YGHRGISGQT SKGSFVDSRQ 420 REFYMGGQSL DLQQQFLHQF QLLPHYLHQG SIQQEEKPKL GIGDELGSSH QQQQQAMVDQ 480 LYKAAELAQS GNLVLADGIL ARLNHQLSPN GKPFQRAAFY CKEALQLLLH CTSNNMDDPS 540 SACSSPISFI YKIAAYKSFL EISPLGQFVN FTCNQALLEA LEGFDRIHIV DFDIGYGGLW 600 ASLLQELAVR SGGPPSLKIT AMASPSAHNQ LELGLTRESL IQFANEINVS LEFEVMSVDL 660 LSSGSWLLPE NEAVAVNLPV GSLADYQFSM PLVLRFVKQL APKIVLSVDG GCYRTDLSFA 720 NHVIHALQSY SNLLESLDAA NAHTDALQKI EKFLLQPGIE RIMTGRFRSP EKTQHWRSMA 780 LAAGFSPVAF SNLAESQAEC IIKRFPVRGF QIEKRQSSLF LCWQRKELIS ASAWKC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-35 | 483 | 834 | 25 | 378 | Protein SCARECROW |
5b3h_A | 3e-35 | 483 | 834 | 24 | 377 | Protein SCARECROW |
5b3h_D | 3e-35 | 483 | 834 | 24 | 377 | Protein SCARECROW |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678336030 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090295.1 | 0.0 | scarecrow-like protein 6 | ||||
TrEMBL | A0A2G9GWL5 | 0.0 | A0A2G9GWL5_9LAMI; Uncharacterized protein | ||||
STRING | PGSC0003DMT400066799 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6253 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-130 | GRAS family protein |