PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678335059

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 468aa MW: 50339.7 Da PI: 8.2873

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678335059	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H 678335059 71 FVCEICNKGFQRDQNLQLHRRGH 93 89*******************88 PP
2	zf-C2H2	14.1	0.00014	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+k + s+Lk H +t+ 678335059 147 HRCDRCSKKYAVLSDLKAHVKTC 169 79*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.5E-5	70	93	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.13E-8	70	93	No hit	No description
PROSITE profile	PS50157	10.949	71	93	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.4E-5	71	93	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	71	93	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	73	93	IPR007087	Zinc finger, C2H2
SMART	SM00355	89	112	142	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.4E-5	135	168	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.13E-8	142	167	No hit	No description
SMART	SM00355	74	147	167	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MEDEEEVEES CLRELSYDQC PPMEEAGELI HESSKLPVIE TKKRRNFPGA RDPDAEVVAL 60 SPKALLATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTSKDVRKR VYVCPEPTCV 120 HHDPARALGD LTGIKKHFSR KHGEKKHRCD RCSKKYAVLS DLKAHVKTCG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAQ ETARSGPAAE VNAQILRQPP SATSSPPPPL TPPPGVLSPI 240 LSAHSSELQG SRGAAQFQSL TGPNVAVATV SSSCGGASDR SFCTVGSSEM SQSLNPRRCY 300 PRLFRPISDS VSLTLSPSLY GVLSSFPGAP QNPRPTYIPN SPPVLSATAL LQKATQMGTT 360 TSNSSVLHTF SSPPAPPPPT AGISTMAAAS VSAASKWSFP SPFDESILRH SGEAGTATLD 420 FLGLGMGSSG FLSSIAGAAD LSSDTLSAMY SGITAWDDDS SDRKPSAL

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MEDEEEVEES CLRELSYDQC PPMEEAGELI HESSKLPVIE TKKRRNFPGA RDPDAEVVAL  60
SPKALLATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTSKDVRKR VYVCPEPTCV  120
HHDPARALGD LTGIKKHFSR KHGEKKHRCD RCSKKYAVLS DLKAHVKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAQ ETARSGPAAE VNAQILRQPP SATSSPPPPL TPPPGVLSPI  240
LSAHSSELQG SRGAAQFQSL TGPNVAVATV SSSCGGASDR SFCTVGSSEM SQSLNPRRCY  300
PRLFRPISDS VSLTLSPSLY GVLSSFPGAP QNPRPTYIPN SPPVLSATAL LQKATQMGTT  360
TSNSSVLHTF SSPPAPPPPT AGISTMAAAS VSAASKWSFP SPFDESILRH SGEAGTATLD  420
FLGLGMGSSG FLSSIAGAAD LSSDTLSAMY SGITAWDDDS SDRKPSAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-29	143	204	3	64	Zinc finger protein JACKDAW
5b3h_F	5e-29	143	204	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678335059

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022894591.1	1e-128	protein indeterminate-domain 2-like isoform X2
Swissprot	Q9LVQ7	1e-105	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2Z7AM57	1e-137	A0A2Z7AM57_9LAMI; Zinc finger protein JACKDAW-like
STRING	XP_009805007.1	1e-122	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-105	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]