PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678333240
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 284aa    MW: 30894.7 Da    PI: 5.7029
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678333240genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.6e-20206240135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                Cs+Cg+tkTp+WR gp g+ktLCnaCG++y++ +l
  678333240 206 CSHCGVTKTPQWRAGPLGSKTLCNACGVRYKSGRL 240
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.8E-775281IPR016679Transcription factor, GATA, plant
SuperFamilySSF577162.42E-15198262No hitNo description
PROSITE profilePS5011412.202200236IPR000679Zinc finger, GATA-type
SMARTSM004016.4E-17200254IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.8E-15204238IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.02E-16205253No hitNo description
PfamPF003201.3E-17206240IPR000679Zinc finger, GATA-type
PROSITE patternPS003440206231IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGGLHQFVQE MDAGDVSSDD LFVDQLLDFS HGCCDAEEPP EKMEEFEGKK DEAFSVSEKL  60
PAPLDIVLSS ETDLDSLMPP DEGLESLEWL SHFVEDTFSD FSLTGKLPEK AAALPPPPQQ  120
EKQSFVSVVQ TKARTKRARA GNRVCPILSP SLADSTTTSS SSSSSSPTSY VSQSITSEKL  180
LTKKKKKGPP EDSSVSAAAA GQTRRCSHCG VTKTPQWRAG PLGSKTLCNA CGVRYKSGRL  240
LPEYRPACSP TFSSELHSNN HRKVMEMRRR KEMEMEAGGA VPSF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678333240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100952.11e-92GATA transcription factor 5-like
SwissprotQ9FH579e-53GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2Z7BUI72e-83A0A2Z7BUI7_9LAMI; GATA transcription factor
STRINGMigut.L00033.1.p1e-82(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-40GATA transcription factor 5