PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678332745
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 311aa    MW: 34860.3 Da    PI: 9.4204
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678332745genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.31.5e-1649136186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +Wt++ + +Li+a  e+  +l+rg+lk+++W++v++ +  ++gf+++pk   qCk++++ ++k+yk +k+   ++ ++ s ++++fd+l+
  678332745  49 CWTEEATALLIDAWGERYMELSRGNLKQKHWKDVAEIVnTQEGFSKTPKtdvQCKNRIDTVKKKYKTEKAKVVSG-CGPS-KWRFFDRLD 136
                8*************************************889999998865559*********************8.6665.8******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-2647138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEPEASPPPS GRTLAGYAAH QSSCSVTLAL PTQKQKSAGS GFGGGREDCW TEEATALLID  60
AWGERYMELS RGNLKQKHWK DVAEIVNTQE GFSKTPKTDV QCKNRIDTVK KKYKTEKAKV  120
VSGCGPSKWR FFDRLDELLV PTGKISSGSL PSDPDRLTRS SSATNGKFQY QQKRSRRRAP  180
VQSCDDSESE NSVDSSDGFS PRICKRPRST TANYAPSLRP CAMNNKAVDS ARGNAMEPNS  240
WASCIQGLTQ TILRFGEAYE QVETEKLQQL MDMEKQRMKL TKELELQRMR CLMETQMELS  300
QLKNRRPANK D
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678332745
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072765.11e-106trihelix transcription factor ASIL2
SwissprotQ9LJG83e-50ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2G9I2A21e-105A0A2G9I2A2_9LAMI; Transcription factor GT-2
STRINGMigut.I01197.1.p1e-91(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103321823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-45sequence-specific DNA binding transcription factors