PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678332161
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 321aa    MW: 36970.3 Da    PI: 8.0497
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678332161genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF412.4e-131253445
               -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
     SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 ++ r+ tf kR++g++KK  E  +LCd+++++i++ ++++
  678332161 12 GKERSRTATFKKRKAGLIKKMVEFTTLCDVNACMIVYCPKQE 53
               567889*******************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.92E-16155IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-10160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.287148IPR002100Transcription factor, MADS-box
CDDcd002661.91E-17276No hitNo description
PRINTSPR004042.4E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-141153IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRAKLRMEL IGKERSRTAT FKKRKAGLIK KMVEFTTLCD VNACMIVYCP KQETSAAVVE  60
PEIWPENREE VRRIVEIYKS KTGESGNKTF GLTDFFKDRK KKVEDDLAKL RKMNLEAKYP  120
TKIDFISAVP ESGLRLFAAE LMERLDYVKR RIGFLRSREQ STLMDMSFVP FYNLAAAMQG  180
FEAIKAAVKP YEGYPQYPYS DHHHHQEIHH NSPMMQLTDE NNFREACNSG NTQCASIQQF  240
IYDSSNCGVF SHNPRQLARH YPPAISPPVQ PQYIPMIPPV QPPPPYAQCT AMVPYPTEDE  300
GEDAQGYILQ HQMNNYIAYY E
Cis-element ? help Back to Top
SourceLink
PlantRegMap678332161
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552001.13e-80agamous-like MADS-box protein AGL14
TrEMBLA0A2G9HM508e-75A0A2G9HM50_9LAMI; MADS box transcription factor
STRINGMigut.N01290.1.p2e-62(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-20M-type_MADS family protein