PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678332051
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 767aa    MW: 83906.7 Da    PI: 5.5886
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678332051genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-155599147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
        678332051 55 RERWTEEEHTKFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 99
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.44E-1649105IPR009057Homeodomain-like
PROSITE profilePS5129419.28750104IPR017930Myb domain
TIGRFAMsTIGR015576.8E-1654102IPR006447Myb domain, plants
SMARTSM007179.9E-1354102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-85595IPR009057Homeodomain-like
PfamPF002495.0E-135598IPR001005SANT/Myb domain
CDDcd001671.46E-957100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MGGFNGISCG HFFFFFRSDL LIDLSGGFPS SHCKKEAILR LLCQTRKQYT ITRQRERWTE  60
EEHTKFLEAL KLYGRAWQRI EEHIGTKTAV QIRSHAQKFF TKLEKEATVK GVGNTHDIEI  120
PPPRPKRKPT NPYPRKTCIA PVFQLELKDG NVSDASSNLL QENDPEILYD HGNIQNSRKC  180
HENDSCFDGP CASPASTDNY SFSSKAPMTS RACRQYIQVM DDDSSNQDES AAVSLVTADT  240
VGNHAEHSDE KQLFPENALN GSLIMSAWPS CEEPHCEMVP EPKQSGNCCQ TSIIDEQSSQ  300
NYPRHVPVYI LAGSLGTSAQ HFSADMQSML NHGAQSLCIN QAASATSEYH SNAATPSISQ  360
PIFSCDHLFT SIQNSDDYQA FLQMQSTFMR LILCYLSQNA AVYAAARFAA TLLPWFNMGA  420
PVEPSANLCG LSLSPPTSST SNLEAIAAAT LAAASAWWTA NGLLPSCHHP GFMFSTASAT  480
AAQAACCQSG NVDGEATETT HDPALENQPD VEFSEAQNSK SRTSPSDSEA GEAEKAKGEL  540
TAAGSAEAEN EDAIHDSYKS KNNKQLGRSS CGSNTTSGSE VETDTNKLGK GREEKYLSTN  600
EDNNVLDAAP PIADLFSRRS RTNNSVADSW KEVSEEGRLA FQALFSREVL PQSFSPSHDI  660
SGDVKKQSSN HEEGNKLMLN HDGSTSTSTT SGKLEIRRSS TITGNKREGL FNEELGQNKL  720
KTFRTGFKPY KRCSEAKEAI IPSNHQEEEK DPKKLCLERE VNGGSAS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678332051
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553443.11e-171protein LHY-like
TrEMBLA0A2G9H7531e-177A0A2G9H753_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97101315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.42e-35MYB_related family protein