PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678331676
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family AP2
Protein Properties Length: 483aa    MW: 53950.6 Da    PI: 8.2528
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678331676genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.32.5e-10195251155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a +k++g
  678331676 195 SRYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLASLKYWG 251
                79*******************4444.2344336655.779999*************998 PP
2AP250.55.2e-16294346156
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++ge
  678331676 294 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRGE 346
                57****************988532...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-8195251IPR001471AP2/ERF domain
CDDcd000186.11E-19195261No hitNo description
SuperFamilySSF541712.03E-14195261IPR016177DNA-binding domain
PROSITE profilePS5103217.622196259IPR001471AP2/ERF domain
SMARTSM003801.4E-20196265IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-12196260IPR001471AP2/ERF domain
PRINTSPR003671.0E-6197208IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-18294355IPR016177DNA-binding domain
CDDcd000182.53E-24294355No hitNo description
PfamPF008472.9E-10294346IPR001471AP2/ERF domain
SMARTSM003801.2E-32295359IPR001471AP2/ERF domain
PROSITE profilePS5103219.348295353IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-19295354IPR001471AP2/ERF domain
PRINTSPR003671.0E-6335355IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDSATSANGV RRVFSCCLCF LGFFSLQFYV WVFQTCGRRM GMDDSNRLSV SGPCLQTTFF  60
FDSSTAGYMQ PPPKLEDVFA GGETTATQGS HLTHIYAPTA LFTNDDLKKL VEFQAFSSCN  120
EESLLAPSLS PVESGTIEFI TSNKPTNGLS QGSSFSDHNR NRGWTAMPPA ESAVVAAESQ  180
SSCNKVSDTF GQRTSRYRGV TRHRWTGRYE AHLWDNSCRR EGQARKGRQG GYDKEEKAAR  240
AYDLASLKYW GSSATTNFPV SCYAVEVEEM KHVTKQEFIA SLRRQSSGFS RGASIYRGVT  300
RHHQQGRWQA RIGRVAGNKD LYLGTFSTEE EAAEAYDIAA IKFRGENAVT NFEMSRYDVD  360
AIARRSLPLG GSAKRMRISI EAEEMAPPDA PAPSAHRTNL PVTIQHASDD SPAAPFRHRD  420
SIHHLWDAPM EAPLCIWPHR PLCLYCNLDV QKKDFQKMLP LHSPCMSTLK DKRVKSEMGS  480
FWV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678331676
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097469.11e-138AP2-like ethylene-responsive transcription factor AIL6 isoform X1
SwissprotQ52QU21e-114AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2G9G7T61e-136A0A2G9G7T6_9LAMI; Uncharacterized protein
STRINGGLYMA01G02760.11e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-110AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]