PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678330189 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRAS | ||||||||
Protein Properties | Length: 844aa MW: 94794.2 Da PI: 6.7761 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 361.8 | 9.7e-111 | 472 | 841 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +lL+ cA+av++++++ a+ +L +++++++p+gd mqR+a+yf+ +L+ar+a+ ++++y++l + s ++ l+a++++ ++P k s++ Nq+ 678330189 472 STLLTLCAQAVAAENTRSANDYLRQIRQHSTPAGDGMQRVAHYFADGLEARMAGAGTQIYNTLINMPIS---AADLLKAYHIYLAACPHRKTSNFFSNQT 568 57899**********************************************************999998...89************************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 Il+ +e+ +Hi+Df+ +G+QWp++l++L+ Rp+gpps+R T+++ p +g +++++etg+rLa++A+++++pfefn +a+++e+++l+++++++g 678330189 569 ILNVAEKVGSLHIVDFGTLYGFQWPSFLHKLSLRPGGPPSVRFTAIDFPCPGfrPSQRIQETGRRLASYAKKFNIPFEFNG-LAQNWEAITLDDIKMRKG 667 *************************************************99999***************************.6***************** PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 E+l+Vn+ ++l +lldesv + +rd vLkl+++++P ++v+ ++ hn + Fl+rf eal +ys++fd+l+a ++r+ +er+ +Er+++gre++nv+a 678330189 668 EVLVVNCLYRLRYLLDESVVPDCPRDIVLKLIRKMNPALFVLGIRNGGHNLPFFLTRFREALFHYSSIFDALDAVISRDRHERMLLERVVFGREAMNVIA 767 ********************999***************************************************************************** PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 cegaer er et+++W++rl +aG++ +pl+ +++++a+ ++ +++d + ++++ +l++gWk+r +++S+Wr 678330189 768 CEGAERLERPETYKQWHARLARAGLEVLPLNREIMATARNKVKLYHKD-FVIDDDGYWLLQGWKGRISYALSSWR 841 **********************************************77.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.544 | 445 | 822 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.4E-108 | 472 | 841 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 844 aa Download sequence Send to blast |
MNENRNDAKP LACVSELDDF GHPVPQGFPL LRNLRVDDGH AGTSYFNSTS SKPSVGQQVQ 60 SSRGDHSQDP GYSVNVLKYL SRHLLEEDVD DKIWHSRTSA DANAASRKLN FDPQVQSSRN 120 DRPQNIDSCD DVLNYMRRFL LEDDVEEKGG NPGAANAVSN KMNSFGSNIT PSVKKDFIDD 180 DIKYMHHHRL KDNVGKKASW MRNPADEPRD MISEVGSCIK HEDIDFSDDV LKYINHILLE 240 EGVEEKTCTF QESEALQATE KSLYEAMWGQ YPNSTHSVYG DSSLHGSDDR QEGTSLSSQS 300 YSQSSNSSGL GHASVDGNAS SPASSFELVQ VHSGRHAVVQ LNEGTILSDG KLVVCLSDGE 360 ESPDRRVMES GIGTQEFSNA STGKRHPHAD DVPGLQEGRS SKQFALHRES SIGDDVFDRV 420 LVFRQEKEES AIREEINKAF NATMQEDQSK DIKGRKRGKK KREAKKNEAD LSTLLTLCAQ 480 AVAAENTRSA NDYLRQIRQH STPAGDGMQR VAHYFADGLE ARMAGAGTQI YNTLINMPIS 540 AADLLKAYHI YLAACPHRKT SNFFSNQTIL NVAEKVGSLH IVDFGTLYGF QWPSFLHKLS 600 LRPGGPPSVR FTAIDFPCPG FRPSQRIQET GRRLASYAKK FNIPFEFNGL AQNWEAITLD 660 DIKMRKGEVL VVNCLYRLRY LLDESVVPDC PRDIVLKLIR KMNPALFVLG IRNGGHNLPF 720 FLTRFREALF HYSSIFDALD AVISRDRHER MLLERVVFGR EAMNVIACEG AERLERPETY 780 KQWHARLARA GLEVLPLNRE IMATARNKVK LYHKDFVIDD DGYWLLQGWK GRISYALSSW 840 RPAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-50 | 458 | 842 | 1 | 380 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678330189 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077208.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_020549007.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_020549008.1 | 0.0 | scarecrow-like protein 14 | ||||
TrEMBL | S8DQR7 | 0.0 | S8DQR7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.F00778.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-169 | GRAS family protein |