PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678329882 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | C2H2 | ||||||||
Protein Properties | Length: 589aa MW: 65441 Da PI: 5.4679 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00061 | 53 | 74 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C+ F ++ n++rH r H 678329882 53 KCEKCSSEFCSPINFRRHARIH 74 8*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.265 | 52 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 54 | 74 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 589 aa Download sequence Send to blast |
MCTFVRQDMG LESMIQYSSS NNPVEWIQFL RALDQPDLPG WPLITPIKVQ MLKCEKCSSE 60 FCSPINFRRH ARIHRRSLKL VKEPQNLRDS LTKFWDKSSV AERKKVVSFE GVMLKKIPGS 120 SVIEALAGAL LEQAVWALPQ AYLKAGSKLL EIVQARAPLE LTSSQELFSI LDDASEGTFL 180 RAGTAEDVLN YVFDREAANS LEFKNLVART SFLFELQLVK ACLADKDAEA LRCQKLLVEE 240 EEASLKRQAR LFERRKQKKL RQKEQKAKEQ LCATKQDTSF TAFSAGGQVL SEESIPSSSS 300 EAGSSPGNGP ADLGTWVDSM LLESKESKEH SGFQIEITDE CADQRDSEPF EPSLALNERQ 360 SFEIRCLQES GLEMERASMF GLMPNPNIHS KPEVFEKSEG NADDPPHNSS KVLSSKYAVT 420 GDDSVESWLL GVTDQHIDEG NRRKVVIGSL FIPLNSSAYD QHCPCSINVE NEVHVEPAVL 480 DPSAAKGNSK AEAILFGSKH VAGKPDTDSK GISPLEVVIK NEAMQNEIFA SPSKDIQESG 540 KHQHPVLDSD GSSPLRFSST EAKEFLTKRW RQTVSIDHVK LCLKPDHGT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 252 | 259 | ERRKQKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678329882 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3722 | 21 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.1 | 9e-79 | C2H2-like zinc finger protein |