PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678327309
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 275aa    MW: 30671.8 Da    PI: 6.7053
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678327309genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.41.2e-202067249
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               +i n  n qvtfskRr+g++KKA+EL++L +ae+avi+fs+ +k y +
  678327309 20 KIANINNLQVTFSKRRAGLFKKASELCTLSGAEAAVIVFSPANKAYCF 67
               789999*************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.391171IPR002100Transcription factor, MADS-box
SMARTSM004325.9E-291170IPR002100Transcription factor, MADS-box
CDDcd002657.37E-301288No hitNo description
SuperFamilySSF554551.44E-241293IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-141333IPR002100Transcription factor, MADS-box
PfamPF003191.3E-212067IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-143348IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-144869IPR002100Transcription factor, MADS-box
PROSITE profilePS010338.04669111IPR000971Globin
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0019825Molecular Functionoxygen binding
GO:0020037Molecular Functionheme binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MQEAPAGKRT RGRQKTSMEK IANINNLQVT FSKRRAGLFK KASELCTLSG AEAAVIVFSP  60
ANKAYCFGHP NVQTLMDRFN GVTEASHSDP VIEAHRSSTI RELNSELTQL ESMLRMEKRR  120
SEELELVRKM GRMQHWIPVP PEEMTSVSQL KDLEQSIMAF ERSIDQKVQN ELLLLAAAAN  180
SNHLPMYADT TNALVAGHQD ILSSIIPSLE SNHCSHFTPG FSHPGADVEP PSELNPMAGM  240
FPTDDLHNPF LQFDHQSLAF NLHDGFGGRH TPRML
Cis-element ? help Back to Top
SourceLink
PlantRegMap678327309
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088154.26e-56agamous-like MADS-box protein AGL62
STRINGMigut.B00479.1.p1e-52(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-41AGAMOUS-like 62