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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678325446 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | CO-like | ||||||||
Protein Properties | Length: 336aa MW: 37695.1 Da PI: 8.2108 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 27.5 | 6.5e-09 | 12 | 55 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 +r C+ + + +++++C ++ +lC++C ++ H+ H+v 678325446 12 ARACDYCVKTRARWYCAADDAFLCQSCDSSVHSAnlvarrhHRV 55 678*****************************668888886655 PP | |||||||
2 | CCT | 63.7 | 5.5e-22 | 286 | 328 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr +R+F+KkirYe+RK +Ae+RpR+KGrF k+ 678325446 286 REARVSRYREKRLRRLFSKKIRYEVRKLNAEKRPRMKGRFIKR 328 9***************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.3E-8 | 10 | 57 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.537 | 10 | 57 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.5E-7 | 12 | 55 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.72E-10 | 13 | 57 | No hit | No description |
Pfam | PF06203 | 4.0E-17 | 286 | 327 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.537 | 286 | 328 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MGASPAAGAK SARACDYCVK TRARWYCAAD DAFLCQSCDS SVHSANLVAR RHHRVRLKKE 60 WLKHSLEVSV PIWHRGFCRK ARTPRQKRIA AEEASTVPEN SGGEESPVKN EADRLYQVPS 120 FDDGEKTGYS SLQALNDFLH SDTDLDEFAA DVESLLGKGV ENETLQMSEL GIWERERVIK 180 VENEAIAGNC SDHQPPRPFE SDPGYDSPNA GDRDHSSKPD DSNKVFLELN YEGVLSSWGT 240 TRSPWTTGER PDSNSTHCWL PDCTGCCGKM HGYGTTGTAN GDDGGREARV SRYREKRLRR 300 LFSKKIRYEV RKLNAEKRPR MKGRFIKRLI PIAPMG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678325446 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076793.2 | 1e-111 | zinc finger protein CONSTANS-LIKE 16 | ||||
Swissprot | Q8RWD0 | 9e-74 | COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A0A2G9HYH3 | 1e-102 | A0A2G9HYH3_9LAMI; Uncharacterized protein | ||||
STRING | XP_009602362.1 | 2e-97 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1539 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 3e-66 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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