PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678325266
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 812aa    MW: 88701.5 Da    PI: 6.1116
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678325266genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.85.7e-21138193156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L++rqVk+WFqNrR+++k
  678325266 138 KKRYQRHTPQQIQELEALFKECPHPDEKQRLELSKRLSLETRQVKFWFQNRRTQMK 193
                688999***********************************************999 PP
2START1916e-603365541206
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                ela++a++elvk+a+++ep+W +s     e +n de++++f +  +     + +ea+r+sgvv+ ++  lve+l+d++ +W e+++    + +t++vis+
  678325266 336 ELALSAMDELVKMAQSGEPLWIRSLetgtETLNHDEYTRNFNPCIGmrpngFITEASRESGVVIVNSSALVETLMDSN-KWAEMFPytvaRTTTTDVIST 434
                57899************************************998889*******************************.********************* PP

                T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
      START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                g      g lqlm aelq+lsplvp Rd  f+R+++ql +g+w++vd+S+d  ++ p       +++lpSg+l+++++ng+skvtwveh+++++  +h l
  678325266 435 GmggtrnGCLQLMHAELQVLSPLVPvRDIHFLRFCKQLAEGVWAVVDISIDAIRETPG------CRRLPSGCLVHDMPNGYSKVTWVEHTEYDETEVHVL 528
                *******************************************************997......788********************************* PP

                HHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 181 lrslvksglaegaktwvatlqrqcek 206
                +r+++ksgl +ga +wvatlqrqce+
  678325266 529 YRPMIKSGLGFGAPRWVATLQRQCEC 554
                ************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.17E-20121195IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-21124189IPR009057Homeodomain-like
PROSITE profilePS5007117.831135195IPR001356Homeobox domain
SMARTSM003891.0E-18137199IPR001356Homeobox domain
PfamPF000461.7E-18138193IPR001356Homeobox domain
CDDcd000862.93E-19138195No hitNo description
PROSITE patternPS000270170193IPR017970Homeobox, conserved site
PROSITE profilePS5084839.893327557IPR002913START domain
SuperFamilySSF559617.6E-35329554No hitNo description
CDDcd088757.15E-119331553No hitNo description
PfamPF018528.7E-52336554IPR002913START domain
SMARTSM002342.2E-42336554IPR002913START domain
SuperFamilySSF559611.54E-24575799No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MNFGDFLDSN NNILGASVGF GTDLPYANGN SHKIAIVAPP SSNGIINAMP SGVIAHSPHL  60
VSQNLSNKIF NSPGLSLALQ SGMDGQGEVA RTGENYDGSN VGGGKRSRDD DHESRSTSDN  120
FDGASGDDHD GTDKPSRKKR YQRHTPQQIQ ELEALFKECP HPDEKQRLEL SKRLSLETRQ  180
VKFWFQNRRT QMKTQLERHE NSLLRQENDK LRAENLAMRE AMRNPICTNC GGPAIMGEIS  240
LEEQQLRIEN ARLKDELDRV CVLAGKFLGR PVFSHNSSLK LGVGGNGYGD LSAHPSMLPL  300
GLPDFGSEMP IIPTTKQTMN AAAPIERSLE RSMYLELALS AMDELVKMAQ SGEPLWIRSL  360
ETGTETLNHD EYTRNFNPCI GMRPNGFITE ASRESGVVIV NSSALVETLM DSNKWAEMFP  420
YTVARTTTTD VISTGMGGTR NGCLQLMHAE LQVLSPLVPV RDIHFLRFCK QLAEGVWAVV  480
DISIDAIRET PGCRRLPSGC LVHDMPNGYS KVTWVEHTEY DETEVHVLYR PMIKSGLGFG  540
APRWVATLQR QCECLAILMS SAAQDKDPHS GAITPGGRRS MLKLAQRMTN NFCAGVCAST  600
VHNWDKLRTE NVDDDVRVMT RKSVDDPGEP QGIVLSAATS VWLPVTPQRL FDFLRNEHLR  660
SEWDILSNGG PMQEMAHIAK GQDHGNCVSL LRASAMNANQ SNMLILQETC VDPAGSLVVY  720
APVDIPAMHV VMNGGDSAYV ALLPSGFAIV PDGRGAGDGA GGGFQGSLLT VAFQILVNSL  780
PTAKLTVESV ETVNNLISCT VQKIKAALHC EG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678325266
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093167.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A2G9HWV60.0A0A2G9HWV6_9LAMI; Transcription factor DLX
STRINGXP_009602856.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]