PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678324670
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 725aa    MW: 78600.4 Da    PI: 6.4048
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678324670genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-082450128
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIa 28
                     r rWT+eE+ ++++a k++G   W +I 
        678324670 24 RERWTEEEHNRFLEALKLHGRA-WQRIE 50
                     78******************88.*9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.77E-141889IPR009057Homeodomain-like
PROSITE profilePS5129414.0311988IPR017930Myb domain
TIGRFAMsTIGR015575.4E-102286IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.9E-62379IPR009057Homeodomain-like
SMARTSM007171.0E-62386IPR001005SANT/Myb domain
PfamPF002492.1E-52450IPR001005SANT/Myb domain
CDDcd001674.69E-72684No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010243Biological Processresponse to organonitrogen compound
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043496Biological Processregulation of protein homodimerization activity
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MDPCFSGEDL VIKTRKPYTI TKQRERWTEE EHNRFLEALK LHGRAWQRIE EARLPFISIT  60
LDIGAEHIGT KTAIQIRSHA QKFFTKLEKE ATVKGTGNAL DIEIPPPRPK RKPANPYPRK  120
KCEVPALQLG LNDSKSSDTT STSLSMAFVK ESEDLSDDAK QQNSDHEKDD SITALNLDMV  180
APCTSPTSTN SSLESETPER SCTFRQFVPL VNGSHNQKGS AESLFSAKPT GSHAEQAQQK  240
RLLNDNILNS MVPMGLCPSP EESSHGEMVH DPIDETSHNC PRNVPVHILG GSCGSRQHPP  300
NMPCMKSVPN QTGFHGDQST FINAAASGTS ENGANGAAIP PQYLHCHPFF APMMNTEDYQ  360
SLQQMSSTFS GLVFSALAQN AALYAAASFA STMWPWLNLG GAPVEPSANS SGIPQPRPMN  420
PTSSMAAIAG ATVAAATAWW AANGMFPLGP QYHAGFACSP PSAAAAQTAG SQSGNVNGEA  480
RESGADPTLQ CQQPDGKLFN ALHSASKPPT SSSSDSEASE AEKLNGRLNP SGTAEAEKSS  540
GSNVSINEKQ MDRFSSGSNT LSSSEVEPDA TKMNEENHME TMEVTEQPNG VPPPTIDLSS  600
RRSRSNNSLN DPWKEVSQEG RLAFQALFSR EVLPQSFPPS HVLTNKLKKH CSGCREDGDG  660
ASIFKPDEEK GSSFNIGKKH EGPLNQELGH TKAKDYRTGF RLYKRCSMEA KEIPEEHKDS  720
KKLRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107120RPKRKPANPYPRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00103PBMTransfer from AT2G46830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678324670
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553443.11e-160protein LHY-like
TrEMBLA0A2G9H7531e-155A0A2G9H753_9LAMI; Uncharacterized protein
STRINGMigut.N01518.1.p1e-137(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97101315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.12e-37circadian clock associated 1