PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678323810
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 513aa    MW: 58323.4 Da    PI: 4.9277
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678323810genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.12.4e-2847130186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                rW+++e+laL+++r++me ++r+++ k+plW+evs+ ++e g++rs+k+Ckek+en++k++k++ke +++  s++ +++++f+qle
  678323810  47 RWPQEETLALLKIRSDMEMAFRDSAHKAPLWDEVSRELAELGYHRSAKKCKEKFENVSKYHKRTKEARSS--SQKARSYRFFEQLE 130
                8********************************************************************9..577778******97 PP
2trihelix100.41.4e-31349433186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                rW+k ev +Li +++++++ + ++  k+plWee+s+ mr++g+ r++k+Ckekwen+nk+yk++k+++k+r +e+s+tcpyf+ l+
  678323810 349 RWPKAEVETLIMLKTDLDSMYHDNGPKGPLWEEISSSMRKHGYDRTAKRCKEKWENINKYYKRVKDSNKRR-PEDSKTCPYFNLLD 433
                8********************************************************************97.99********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.96940104IPR017877Myb-like domain
SMARTSM007176.3E-444106IPR001005SANT/Myb domain
PfamPF138377.7E-2046130No hitNo description
CDDcd122031.53E-2246111No hitNo description
SMARTSM007170.02346408IPR001005SANT/Myb domain
PfamPF138371.7E-22348435No hitNo description
PROSITE profilePS500907.259348406IPR017877Myb-like domain
CDDcd122033.21E-26348413No hitNo description
Gene3DG3DSA:1.10.10.606.7E-4349405IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MLEDSVLYEN SSLGAEGVAV AGPDAVMVEL GNECGFDDGE RNSSGNRWPQ EETLALLKIR  60
SDMEMAFRDS AHKAPLWDEV SRELAELGYH RSAKKCKEKF ENVSKYHKRT KEARSSSQKA  120
RSYRFFEQLE LLDSNFCIPS APMNQISSYS MEMVPTPSTT VMTKAVNSSQ ELNLPCTDRQ  180
HDADFMLAPT STELSSEESE GSAKKKRKLV DYFERLMKDV LEKQEELQNK FLEAIEKCEK  240
ERIAREEAWK VQEMARIKRE KELFAQERAM AAAKDAAMLA FLQKLTQQTI PVQMPDILTT  300
LFDKPSENLG NALEKHSEFQ ENVVGESSTR IERQDNSAGE STILMSSSRW PKAEVETLIM  360
LKTDLDSMYH DNGPKGPLWE EISSSMRKHG YDRTAKRCKE KWENINKYYK RVKDSNKRRP  420
EDSKTCPYFN LLDSIYANKS KKLECISDKG GSNMKPEQIL MQMIDQQPQA SLGEYGESDA  480
LHQDDDVEEE QGDNSGSGYQ IIGNNLSSVT SLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208KKKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678323810
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099803.10.0trihelix transcription factor GT-2-like
TrEMBLA0A2G9H2520.0A0A2G9H252_9LAMI; Transcription factor GT-2
STRINGXP_009626647.11e-161(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97942328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-111Trihelix family protein