PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678323674
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 576aa    MW: 63307.4 Da    PI: 7.4703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678323674genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.4e-13431477455
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  678323674 431 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 477
                799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.5E-5446236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85427476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-18430492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.33E-14430481No hitNo description
PfamPF000103.2E-10431477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-17431487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-16433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MGFVGWNNED SAVAAAVLGS NAFNYLMSSS ISAECSLIAV ENDESLQNKL SDLVEHTNYS  60
KCNWNYAIFW QLSRSRSGDL VLAWGDGCCR EPRADEEAEG HQRFDAKFRM GDESQQRMRK  120
RVIQMLHKTF GGSDDDCYAF GLDRVTDTEM FFLASMYFSF PTGQGGPGKC FVSGKHIWLS  180
NALSMSVDYC FRSSLAKSAG IQTIVLIPTD IGVVELGSVR SIPENLGILK LVGSKFSSFS  240
CPLSKQVVAE AVKSDKQDSV GGVTGLAIAS RDRCNFKTFG QGSLSNGLAI GGREQCNPKI  300
FGQDNSSNVQ FKEKRSMRQT ASHHNGFHEA PCTAYSNLKL GSDEICRHPM VVAGVSEVGM  360
GCNAEFWLNG TQQGKPLQMK IDFSGSSSKG IDSEHSDHEA CCKRETSEPS EERRPRKRGR  420
KPANGRDEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI AYITELQKRV  480
SDLEGERGGE PMEANHDALA KSIDIQVDGD KLTLRHTCPM ETHPASSLIR AITKANGRIL  540
EAKMAAGAGA MYHTFVVKSQ GSERLTKEKL IESMSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-27425487264Transcription factor MYC2
5gnj_B1e-27425487264Transcription factor MYC2
5gnj_E1e-27425487264Transcription factor MYC2
5gnj_F1e-27425487264Transcription factor MYC2
5gnj_G1e-27425487264Transcription factor MYC2
5gnj_I1e-27425487264Transcription factor MYC2
5gnj_M1e-27425487264Transcription factor MYC2
5gnj_N1e-27425487264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412420RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678323674
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093944.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2Z4K5120.0A0A2Z4K512_TECGR; BHLH1 protein
STRINGPGSC0003DMT4000006520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-145bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]