PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678323088

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 226aa MW: 25682.1 Da PI: 9.6647

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678323088	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.1	1.2e-51	14	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtd elv +yL+kkv+++k++l +vi+evd+y+vePw+L+ k + +++ew+fF + +k +tg+r+nrat +g+Wkatg+dkev++ 678323088 14 VPPGFRFHPTDVELVGYYLRKKVSSQKIDL-DVIREVDLYTVEPWELQdKcA--IgleRQHEWFFFNYKCRKCPTGRRTNRATITGFWKATGRDKEVYD- 109 69**************************.9***********94432..2233567**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 k++l+g++ktLvfy+grap+g+kt+W+mheyrl 678323088 110 KRSLIGMRKTLVFYTGRAPNGKKTEWIMHEYRL 142 8899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.29E-58	10	165	IPR003441	NAC domain
PROSITE profile	PS51005	54.615	14	165	IPR003441	NAC domain
Pfam	PF02365	6.0E-27	15	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MDPLQTLETR ASGVPPGFRF HPTDVELVGY YLRKKVSSQK IDLDVIREVD LYTVEPWELQ 60 DKCAIGLERQ HEWFFFNYKC RKCPTGRRTN RATITGFWKA TGRDKEVYDK RSLIGMRKTL 120 VFYTGRAPNG KKTEWIMHEY RLQSRGNASS QTPEEGWVVC RAFKKGCNEQ KNNSIDGRNS 180 ETAPAIINAK EDDGYQKGVL GSNAGAMKVA NLLMNAGMAT ASNWSQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-47	2	171	10	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-47	2	171	10	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-47	2	171	10	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-47	2	171	10	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-47	2	171	13	174	NAC domain-containing protein 19
3swm_B	6e-47	2	171	13	174	NAC domain-containing protein 19
3swm_C	6e-47	2	171	13	174	NAC domain-containing protein 19
3swm_D	6e-47	2	171	13	174	NAC domain-containing protein 19
3swp_A	6e-47	2	171	13	174	NAC domain-containing protein 19
3swp_B	6e-47	2	171	13	174	NAC domain-containing protein 19
3swp_C	6e-47	2	171	13	174	NAC domain-containing protein 19
3swp_D	6e-47	2	171	13	174	NAC domain-containing protein 19
4dul_A	5e-47	2	171	10	171	NAC domain-containing protein 19
4dul_B	5e-47	2	171	10	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678323088

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269\|PubMed:17581762, ECO:0000269\|PubMed:17722694}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028774496.1	2e-86	NAC domain-containing protein 37
Refseq	XP_028774497.1	2e-86	NAC domain-containing protein 37
Refseq	XP_028774498.1	2e-86	NAC domain-containing protein 37
Swissprot	Q9SL41	1e-85	NAC37_ARATH; NAC domain-containing protein 37
TrEMBL	A0A2P6RLX5	2e-84	A0A2P6RLX5_ROSCH; Putative transcription factor NAM family
STRING	POPTR_0007s13910.1	3e-85	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18060.1	5e-88	vascular related NAC-domain protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Negi S,Tak H,Ganapathi TR Cloning and functional characterization of MusaVND1 using transgenic banana plants. Transgenic Res., 2015. 24(3): p. 571-85 [PMID:25523085] Tan TT, et al. Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation. Plant Physiol., 2018. 176(1): p. 773-789 [PMID:29133368]