PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678322952
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 337aa    MW: 35569.4 Da    PI: 10.4958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678322952genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05208229223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                kC  Cgk F +   L  H+r+H
  678322952 208 KCVVCGKGFASEKALFGHMRSH 229
                7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.66E-5205232No hitNo description
PfamPF139121.9E-7206230IPR007087Zinc finger, C2H2
SMARTSM003550.0057207229IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.762207234IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-4208231IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MIEFDSIWGL AEIRWLMELI ECNLNVMSAR HFRAQVAPHL AYNARIPGAR RVFVHAAFAL  60
RGGDMDSGNG EPGGGFSSDP LNPKGRGGGG GGEEEKGAAS GVSEAPPASQ SLTLRMGVPG  120
QSAFRWYTRP VPPPPPPLPP PPPPRRNPVS GGLGFLGRQG LVVTVDGGIQ SVPGPGSGGE  180
MTRKKMRHGE GSGKQAKPGS GKGGEHTKCV VCGKGFASEK ALFGHMRSHP GRGWRGAYPP  240
PSFRASEEFA DVRALQQANA TAASAAAPHQ DASAASLLEP GPRHRGRNPL RTAVPFPTST  300
ARRHRMMNND SPHPICIACL SLFCRLDDLA LKTQTEP
Cis-element ? help Back to Top
SourceLink
PlantRegMap678322952
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9281713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.16e-12C2H2 family protein