PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678322107 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB_related | ||||||||
Protein Properties | Length: 249aa MW: 27723.5 Da PI: 6.661 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.2 | 9.3e-09 | 32 | 53 | 23 | 45 |
-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwq 45 +W+ Ia++++ gRt++++k++w+ 678322107 32 RWAQIAKHLP-GRTDNEVKNFWN 53 6*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.25E-7 | 31 | 61 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-11 | 31 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.528 | 32 | 56 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 8.6E-7 | 32 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.72E-7 | 32 | 53 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MSLETGRIIF PTIYLTWKFR SCMPNSDFHF CRWAQIAKHL PGRTDNEVKN FWNSSIKKKM 60 FSMQNQTRFS TGSISDNLYF LNPNTSLIQN DQFSVPAPVQ GCFDDAGRLN QPMVCNPDPN 120 IPFSHPPLSC GNPSTLLVKH NEGSLPGFDW LKIHHLDHLN SFILDNLPAT HYVPSNFDDH 180 SLDEFLGIPK LSCASQVDYI ESVMASLVST TTVACLTTPP PESTLSPVHP ATTSPLRTIV 240 CAGSQSPEK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678322107 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 8e-14 | myb domain protein 26 |