PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678319789 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 233aa MW: 25257.1 Da PI: 7.3113 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.5e-05 | 96 | 118 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F+++ L H++ H 678319789 96 YECQYCSRGFPNSQALGGHQNAH 118 99******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.52E-6 | 93 | 124 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.2E-4 | 94 | 122 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.5E-6 | 95 | 120 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.759 | 96 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 98 | 118 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MRHGNGCGED SARPTHHAFD LDLLHLLPPR QNTSESVGWI GVPCEENATA TCGASVEMNR 60 ETNYQGNSGR LKLFGVNVAE EIAASAESEA DDGRRYECQY CSRGFPNSQA LGGHQNAHKK 120 ERMLHKRAQI QAIRPNVQAG YNSPWVGVSR AREPFQVAHG WSFPGARGVG SVAYAGCVGD 180 SCFLRIGPKE AVKAHERGGL IGPSLNMFSR DGPNSDDVHG LDLHLRLAPT QPF |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678319789 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076533.1 | 3e-48 | zinc finger protein GIS3 | ||||
TrEMBL | A0A068TWM2 | 1e-44 | A0A068TWM2_COFCA; Uncharacterized protein | ||||
STRING | XP_009621927.1 | 1e-43 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2994 | 14 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58070.1 | 2e-12 | C2H2 family protein |