PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678317588 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | bHLH | ||||||||
Protein Properties | Length: 210aa MW: 23366 Da PI: 9.0352 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 6.9e-13 | 45 | 92 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+e+Er RR+riNs +++L+++lP+ K +Ka+ L +Av+ +++Lq 678317588 45 NSHKEAERHRRKRINSHIATLKSILPNV-----IKTDKASLLGEAVRRVRELQ 92 68*************************7.....5****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.824 | 42 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.2E-13 | 45 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-10 | 45 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.80E-9 | 46 | 94 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-13 | 46 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-11 | 48 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 9.46E-8 | 125 | 197 | No hit | No description |
CDD | cd04873 | 5.62E-8 | 129 | 192 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 1.4E-6 | 129 | 194 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSFIIPTPSA PKLEVEEEKM SSHGCKIEHR SFYPGVMVET SASSNSHKEA ERHRRKRINS 60 HIATLKSILP NVIKTDKASL LGEAVRRVRE LQKAAAQLSK EATLNFYFPG ETDELVVCHC 120 ETSGLVKATL CCEDRPEIML DLVQVLKSTE ARVMRAEMST LGGRTMSVLW VQLQADDDAG 180 VARLGNALKP VMEKSGQALP VRKRIRHFPS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678317588 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099996.1 | 1e-59 | transcription factor bHLH30-like isoform X2 | ||||
Refseq | XP_020554627.1 | 1e-59 | transcription factor bHLH30-like isoform X2 | ||||
TrEMBL | A0A2G9G238 | 4e-66 | A0A2G9G238_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H02300.1.p | 7e-53 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7283 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 2e-34 | bHLH family protein |