PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678317505 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB_related | ||||||||
Protein Properties | Length: 247aa MW: 27613.9 Da PI: 7.0409 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.2e-15 | 116 | 160 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + +++G+g+W++Iar+ +++t+ q+ s+ qky 678317505 116 PWTEDEHLLFLMGLQRYGKGDWRSIARHYVTTKTPTQVASHAQKY 160 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.9 | 16 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-12 | 107 | 166 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.803 | 109 | 165 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.16E-16 | 110 | 165 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-12 | 113 | 163 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 5.2E-17 | 113 | 164 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.7E-13 | 116 | 160 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.06E-10 | 116 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MDGRPDFQGS SHFGPEESTW SFADNKVFEI ALSEITTLNH DSPSFFDEIA RKIPWKSARD 60 IQNHYQALVH DLEMIESGPF PVPDYFASRS GTTEGNSTWS AVGRTKIGQP HRKGVPWTED 120 EHLLFLMGLQ RYGKGDWRSI ARHYVTTKTP TQVASHAQKY FRRQASSTPA EKRRPSIHDV 180 QVVNTPALIE RLSVSGLVPS FSTQIPFLSD GGLSFPMISG GGFAPTDPLF FNPYGIATNY 240 SAPAFWF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678317505 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098014.1 | 2e-68 | transcription factor SRM1-like | ||||
Swissprot | Q8S9H7 | 2e-42 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A4D9BUN9 | 1e-64 | A0A4D9BUN9_SALSN; Uncharacterized protein | ||||
STRING | Migut.L00854.1.p | 7e-65 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5234 | 20 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-44 | MYB family protein |
Publications ? help Back to Top | |||
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