PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678317344
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 439aa    MW: 50817 Da    PI: 6.876
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678317344genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.92.7e-23122218183
   trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfd 83 
                +Wt+++v++Li+a+++++e+   ++             +kk++W++vsk+++ergf +sp+qC++k+++lnkryk+++e+ +++t +e++++ ++++
  678317344 122 KWTDEMVRLLITAVSYINEEAVCAEnssigsrrkhanlQKKGKWKSVSKVLAERGFFVSPQQCEDKFNDLNKRYKRLNEILGRGTcCEVVENPSLLE 218
                7**************88777764433466667778888**********************************************8577777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-21120247No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEGNRLSSRN MMQGNVSFGG FDLQEPIRVH HHQQQQPQQF IASHHGSHPR QGPPPLVSTN  60
HKKFPLVAGG GSQVHDHTVS LSDLSKHEKS KSASEEDEPS FAEEISESRK GKKASSPWQR  120
VKWTDEMVRL LITAVSYINE EAVCAENSSI GSRRKHANLQ KKGKWKSVSK VLAERGFFVS  180
PQQCEDKFND LNKRYKRLNE ILGRGTCCEV VENPSLLEVV DHIPEKAKEE VRKILSSKHL  240
HYEEMCSYHN GNRLYLPHDP ELQRSLHLAL GTRDDHEEHD SKCHPLEDND EFDHQMEYDD  300
HEDSGEAAAY GMMQNLPKRT RSSQGPEDFS LKKPPPVHSL DCNKIVDYEG DHVSPEGMEI  360
NSVSKKQWIS QRSVQLEEQR LQIETRMLEL EKERFKWQRF CRKKDRELDF ARMEIERMKL  420
ANERMALELK KKEMELNSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1391403KERFKWQRFCRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678317344
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074759.10.0uncharacterized protein LOC105159405
TrEMBLA0A2G9GZ520.0A0A2G9GZ52_9LAMI; Uncharacterized protein
STRINGXP_006473052.11e-151(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76001830
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-115sequence-specific DNA binding transcription factors