PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

678316847

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 280aa MW: 30767.6 Da PI: 9.1141

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678316847	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.5	1.3e-06	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F++++ L H+r H 678316847 55 HSCSECGKKFRSSMALFGHMRWH 77 79*******************99 PP
2	zf-C2H2	10.8	0.0016	218	240	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C ++Fs+ L H++ H 678316847 218 HRCRICFRVFSSGQALGGHMSGH 240 79****************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.5E-5	54	78	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.7E-8	55	77	No hit	No description
PROSITE profile	PS50157	11.053	55	82	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.1E-5	55	77	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.12	55	77	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	57	77	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.7E-8	213	240	No hit	No description
Pfam	PF13912	3.8E-8	218	242	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.2	218	240	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	220	240	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MNDGSRFPSR DSGPFSYLLS ARRSLKKKRS KMMTRIGDAG RWDGAGFVRN ETAVHSCSEC 60 GKKFRSSMAL FGHMRWHPER EWRGMNHPQE KKIKLQHHPS SSLSSSEFTE EELEAASILL 120 TLANMSPAHT YHYSPPDAVE EKDTTGAVGR FERSSCKKGL PSQQPLPTTT SKGCSKITAN 180 GREQRFSSAS NENAAAIRGD DANEHKCNSN LGTEIGGHRC RICFRVFSSG QALGGHMSGH 240 REKLIPLPPA AAPIDLDLNV DAGSWPSAPE FVPLDLKLGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	27	RRSLKKK
2	24	31	LKKKRSKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678316847

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	9e-24	C2H2-like zinc finger protein