PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678316847
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 280aa    MW: 30767.6 Da    PI: 9.1141
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678316847genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.3e-065577123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ Cgk F++++ L  H+r H
  678316847 55 HSCSECGKKFRSSMALFGHMRWH 77
               79*******************99 PP
2zf-C2H210.80.0016218240123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C +C ++Fs+   L  H++ H
  678316847 218 HRCRICFRVFSSGQALGGHMSGH 240
                79****************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-55478IPR007087Zinc finger, C2H2
SuperFamilySSF576672.7E-85577No hitNo description
PROSITE profilePS5015711.0535582IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-55577IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.125577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SuperFamilySSF576672.7E-8213240No hitNo description
PfamPF139123.8E-8218242IPR007087Zinc finger, C2H2
SMARTSM003551.2218240IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MNDGSRFPSR DSGPFSYLLS ARRSLKKKRS KMMTRIGDAG RWDGAGFVRN ETAVHSCSEC  60
GKKFRSSMAL FGHMRWHPER EWRGMNHPQE KKIKLQHHPS SSLSSSEFTE EELEAASILL  120
TLANMSPAHT YHYSPPDAVE EKDTTGAVGR FERSSCKKGL PSQQPLPTTT SKGCSKITAN  180
GREQRFSSAS NENAAAIRGD DANEHKCNSN LGTEIGGHRC RICFRVFSSG QALGGHMSGH  240
REKLIPLPPA AAPIDLDLNV DAGSWPSAPE FVPLDLKLGF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12127RRSLKKK
22431LKKKRSKM
Cis-element ? help Back to Top
SourceLink
PlantRegMap678316847
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.19e-24C2H2-like zinc finger protein