PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678309735
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Dof
Protein Properties Length: 296aa    MW: 31861.8 Da    PI: 8.2099
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678309735genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.92.5e-393797262
     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
               +e+alkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rkn ++s
  678309735 37 HEQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNTRKS 97
               7899*****************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-293595IPR003851Zinc finger, Dof-type
PfamPF027018.1E-333995IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8824195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MIGPGVDSSS PVGGSAVEEA VFACGRPLME RRLRPQHEQA LKCPRCESTH TKFCYYNNYS  60
LSQPRYFCKT CRRYWTKGGT LRNIPVGGGC RKNTRKSSSA GVAATSKKPS NDFHFPIPSP  120
SVPIHNPENN SLSAFPLSIF SSDQTNTGDL HLNFNEQLQF NPRLFTPGGF LLQNPSQIYA  180
EQGCGFDLME TKNDTFMAAG GADFSNSGIM AAAHKYPSAF DDLYGPCLSL DHPAAGVLDG  240
CQRLMLPCGG DGTADIKPGV KLFSGNSSTG KDSFGFRGIR SWTGFMDGSS AAHSLG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678309735
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48952240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.11e-36Dof family protein