PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678308628
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 320aa    MW: 36032.5 Da    PI: 7.3516
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678308628genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.91.1e-15240265126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +ktelC+ +++tGtC+yG++C+FaHg
  678308628 240 FKTELCNKWQQTGTCPYGNNCQFAHG 265
                79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.3E-19234271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-11236271IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-9239266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.502239267IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-12240265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-10273303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-7274304IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4277304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.765277305IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MQGKYMENTE SGHEKASDAS SSTQYGFSPF YPSNYPENHS VFVDYLNDEY ASSPIGETDD  60
ALRSYFIHIH QQDLLDRYQI LYSQLCIIAK QAQDLYQENV NLKMINLELN NRLAAFLNAT  120
PFHGFESGPG VDAMAAFTRK CLVAEEGISE EETTGKSAVN FVDSALTRSG ILQRSHLPKS  180
ISVRSSGYHK AIRSHGGSLP TESSVKAPNK GKFIGEAQKV YVKGKKEQPL ELEVYNQGMF  240
KTELCNKWQQ TGTCPYGNNC QFAHGIRELR PILRHPRYKT EVCRMILDGI PCPYGHRCHF  300
RHSLTAQENL SRAIGVNTYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A5e-20240303467Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678308628
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833359.11e-111PREDICTED: zinc finger CCCH domain-containing protein 15-like
TrEMBLS8DG711e-113S8DG71_9LAMI; Uncharacterized protein
STRINGMigut.L01008.1.p1e-110(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-64C3H family protein