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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678308089 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | C2H2 | ||||||||
Protein Properties | Length: 259aa MW: 27247.6 Da PI: 10.0136 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 184 | 204 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C C++++s+++ L+ H + 678308089 184 FRCWSCSEVYSSQHALVAHKN 204 89*****************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.077 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.619 | 68 | 90 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.14E-7 | 69 | 90 | No hit | No description |
Pfam | PF13912 | 8.9E-5 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.2E-4 | 70 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.14E-7 | 179 | 203 | No hit | No description |
Pfam | PF13912 | 0.033 | 183 | 203 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 184 | 204 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEINTTLGSL GIIPLSLASD AQQRDQPTGR SVGDGGGGGV GRGGGDGGGS GRRVARRKRD 60 TTSPKITPPC TECGKKFWSR KALCGHMRCH PERGWRGINP PPNFKRRSLW PSLTEEDREA 120 AAWLLLMANG NPDAAALEPR RSIRTAKMSS GSRSVTHGAN GVHGEEDGVG TTAGGGGGGA 180 VRRFRCWSCS EVYSSQHALV AHKNVTLCGG PGTPSAFPTA IKVEPPSTAG VFSENLEDSD 240 IVSRRNLYGG ITLDLRLGF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678308089 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027148744.1 | 6e-32 | zinc finger protein ZAT3-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6385 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 3e-28 | C2H2-like zinc finger protein |