PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678306525
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family FAR1
Protein Properties Length: 794aa    MW: 90689.8 Da    PI: 7.2769
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678306525genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.67.6e-2790192291
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+             +e+++ +ra  +t+Cka+++vk+++dgkw ++++e+eHnHe
  678306525  90 FYQEYARSAGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSlnrprvrqgsnydAENASGRRACVKTDCKASMHVKRRSDGKWIIHRFEKEHNHE 189
                9*****************************************99999********9998888889*********************************** PP

       FAR1  89 lap 91 
                l+p
  678306525 190 LSP 192
                *86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-2590192IPR004330FAR1 DNA binding domain
PfamPF105511.8E-26290381IPR018289MULE transposase domain
PROSITE profilePS509669.223570606IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-5581608IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010218Biological Processresponse to far red light
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MDIDLRLPSG EHDKEDEGES NGIGNMLDDE DKPLTVEGAC VGMGIVEDKS LIEATENQNA  60
SLQDTDFKDV AILEPLPGME FASHGDAYAF YQEYARSAGF NTAIQNSRRS KTSREFIDAK  120
FACSRYGTKR EYEKSLNRPR VRQGSNYDAE NASGRRACVK TDCKASMHVK RRSDGKWIIH  180
RFEKEHNHEL SPAQAVSEQT RRMYAAMARQ FAEYKSAVGL KHDNIGQSEK FRNMALDAGE  240
MNTLLEFFVK MQDLHSNFFY AIDIGEDQRL KNFLWIDGKS RHDYAYFSDV ISFDTSYIKN  300
KYKMPLALFV GVNHHYQFML LGCALVSDES EATFLWVMRT WLKAMGGQAP KIIITDQDKV  360
MKSTVSEAFP STLHYFSLWQ VLGKVSEILN HVTKENESFM PKFEKCIYWS STDEHFDRRW  420
RKFVERFGLK ENELILSLYE DRSKWVPCFM KNGFFAGMSA GQRSEGVNSF FDKYLHRKTT  480
VQEFLKQYEA ILLDRYEEEA KAASETWNKQ PILKSPSPFE KHAAGLYTHA VFRKFQVEVL  540
GAVACIPKRE DQVDKTVNFK VQDFERNLEF AVTLNETKSE ICCICHLFEY KGFLCRHAMI  600
VLQICGISAI PSRYILKRWT RDAKNRYSLG IGPEHLQSRM QRYNDLCQRA MKLGEEGSLS  660
QESYSLTLRA LDDAFENCLN ANSTNKNLLE AGSSASPGIL CIEEDMQGGS LNKTNKKKTA  720
VKKRKGNMES DVIAGGAPDS LQQMDKISPR PVTLDGFFTQ PAVQGIVQLN LMASTRDNYY  780
GNSQTIQGLV CYHK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00078ChIP-seqTransfer from AT3G22170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678306525
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100397.10.0protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2
SwissprotQ9LIE50.0FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBLA0A2G9GLI30.0A0A2G9GLI3_9LAMI; Uncharacterized protein
STRINGMigut.M00094.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.20.0far-red elongated hypocotyls 3
Publications ? help Back to Top
  1. Chang N,Gao Y,Zhao L,Liu X,Gao H
    Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel.
    Sci Rep, 2015. 5: p. 9612
    [PMID:25872642]
  2. Wang C, et al.
    SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes.
    J Genet Genomics, 2015. 42(4): p. 161-8
    [PMID:25953354]
  3. Wang W, et al.
    A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis.
    J Integr Plant Biol, 2016. 58(1): p. 91-103
    [PMID:25989254]
  4. Ma L, et al.
    Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1.
    Mol Plant, 2016. 9(4): p. 541-57
    [PMID:26714049]
  5. Siddiqui H,Khan S,Rhodes BM,Devlin PF
    FHY3 and FAR1 Act Downstream of Light Stable Phytochromes.
    Front Plant Sci, 2016. 7: p. 175
    [PMID:26941752]
  6. Li D, et al.
    FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80
    [PMID:27469166]
  7. Liu L,Li B,Liu X
    FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis.
    Plant Signal Behav, 2016. 11(10): p. e1238545
    [PMID:27660915]
  8. Ma L,Xue N,Fu X,Zhang H,Li G
    Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar.
    New Phytol., 2017. 213(4): p. 1682-1696
    [PMID:27859295]
  9. Liu Y, et al.
    Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1.
    Plant Cell, 2017. 29(9): p. 2269-2284
    [PMID:28842534]
  10. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]