PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678305163
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family BBR-BPC
Protein Properties Length: 342aa    MW: 37830.8 Da    PI: 10.0042
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678305163genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind347.14.2e-106463421301
  GAGA_bind   1 mdddgsre..rnkgyye....pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslas 93 
                mdd ++re  r k+       ++ +s+     +++m ++aerda+i+ernla+sekkaa+aerd aflqrd a+aern+a++erd +++al+++en+ + 
  678305163  46 MDDGAHREngRLKPTQGqwlmQHqPSM-----KHIMGVMAERDAAIQERNLAISEKKAAIAERDLAFLQRDRAIAERNNAIIERDTAIAALQYRENNPQA 140
                888888655555552221222222344.....48**************************************************************9888 PP

  GAGA_bind  94 alpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkk.krqrakkpkekkakkkkkksekskkkvkkesaderskaek 191
                ++p++     ++  ++  +q++   +++++++  r ++ +e++p++ +a+    k++k+ k++ + + k    k++++ s + +++ +++    +sk+++
  678305163 141 HDPPY-----DSGDMNLADQVTIAAVAPEPAKaYRAKRAKETKPVSATASRRPSKSSKRvKEEAEDHSKMVLWKSVQD-SGSGNDDINRQV--GSSKQQW 232
                88776.....45566666777778888888886777777778887764443322222220222222222223333333.223333333333..67***** PP

  GAGA_bind 192 ksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAk 291
                k++dl+ln+vs+De+t+PvPvCsCtG+lr CYkWGnGGWqS+CCtt++S+yPLP+++++r+aR++grKmS++af+klL++Laa+G+dlsnpvDLk hWAk
  678305163 233 KEQDLSLNQVSFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAADGHDLSNPVDLKPHWAK 332
                **************************************************************************************************** PP

  GAGA_bind 292 HGtnkfvtir 301
                HGtn+++ti+
  678305163 333 HGTNRYITIK 342
                *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062174.9E-9946342IPR010409GAGA-binding transcriptional activator
SMARTSM012267.6E-14246342IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MLSEQRAKGQ ESFPPLGSGS PHFPFQFPPL SKKVQAVIIL SQGSPMDDGA HRENGRLKPT  60
QGQWLMQHQP SMKHIMGVMA ERDAAIQERN LAISEKKAAI AERDLAFLQR DRAIAERNNA  120
IIERDTAIAA LQYRENNPQA HDPPYDSGDM NLADQVTIAA VAPEPAKAYR AKRAKETKPV  180
SATASRRPSK SSKRVKEEAE DHSKMVLWKS VQDSGSGNDD INRQVGSSKQ QWKEQDLSLN  240
QVSFDETTMP VPVCSCTGVL RPCYKWGNGG WQSSCCTTNL SMYPLPAVPN KRHARVGGRK  300
MSGSAFSKLL SRLAADGHDL SNPVDLKPHW AKHGTNRYIT IK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678305163
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313105.11e-153protein BASIC PENTACYSTEINE6-like
RefseqXP_009798749.11e-153PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009798750.11e-153PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009798751.11e-153PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451527.11e-153PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451528.11e-153PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451530.11e-153PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451531.11e-153PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016509512.11e-153PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016509513.11e-153PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016509514.11e-153PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016509515.11e-153PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016509516.11e-153PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_018628854.11e-153PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
RefseqXP_018628855.11e-153PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
RefseqXP_018628856.11e-153PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
RefseqXP_018628857.11e-153PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
RefseqXP_019244940.11e-153PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
RefseqXP_019244941.11e-153PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
SwissprotQ8L9991e-128BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A076L2D61e-152A0A076L2D6_TOBAC; GAGA-binding transcriptional activator
TrEMBLA0A1J6J2731e-152A0A1J6J273_NICAT; Protein basic pentacysteine6
TrEMBLA0A1U7Y9Y31e-152A0A1U7Y9Y3_NICSY; protein BASIC PENTACYSTEINE6-like
STRINGXP_009798749.11e-152(Nicotiana sylvestris)
STRINGXP_009610156.11e-152(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53532338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-125basic pentacysteine 6