PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678302973
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 506aa    MW: 55681.3 Da    PI: 7.2723
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678302973genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12365411455
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +h e+Er+RR+++N+ f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  678302973 365 NHVEAERQRREKLNQQFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 411
                799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-4951239IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.463361410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-18362424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.34E-13364415No hitNo description
PfamPF000107.5E-10365411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-17365423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-15367416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MRGMGIVGWS NQDCAVAAAV LGSRAFEYLM MSSSISAECV SLMAVGNNEN LHDKLSDLVE  60
PPNSTSCWNY AIFWQLSRSG TGELVLVWGD GCCREPRVDE ESDMAQILRF GADDESQQRM  120
RKGVLQKIHQ TFGGVDDDCY AFGLDRVTDT EMFFLASMYF SFPTGQGGPG SCFLSRKHVW  180
VSNALSSSSM EYCFRSALVK SAGIRTIVLI PTDVGVVELG SVTSLPENME LLKLVGSSFS  240
SFPTFLGRQG VVKAVENDEH DPTKGRRCAP KIFGQNLVKE KLLNRTQRSS DMKPGGDEIY  300
RVDIQQKPGS MQIDFSRSRT SNPQELPSHP VVVSCKREAS SGVLEDRRPK KRGRKPANGR  360
DEPLNHVEAE RQRREKLNQQ FYALRAVVPN ISKMDKASLL GDAIAYITEL QKKLSDLEHE  420
KQTGNGAASA GVVSIEVEGD ETRVKVISPL DAHPASRLIN AIQTANASIL EAKMAAGTDK  480
MFHTFVMKSH GSSHLTKEKL LESMSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-28359421264Transcription factor MYC2
5gnj_B3e-28359421264Transcription factor MYC2
5gnj_E3e-28359421264Transcription factor MYC2
5gnj_F3e-28359421264Transcription factor MYC2
5gnj_G3e-28359421264Transcription factor MYC2
5gnj_I3e-28359421264Transcription factor MYC2
5gnj_M3e-28359421264Transcription factor MYC2
5gnj_N3e-28359421264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1346354RRPKKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678302973
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093944.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A0H3Y7G50.0A0A0H3Y7G5_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_009781532.10.0(Nicotiana sylvestris)
STRINGMigut.N01539.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-150ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]