PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678302385
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NF-X1
Protein Properties Length: 1084aa    MW: 118003 Da    PI: 8.0108
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678302385genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X122.32.9e-07296314119
   zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                CG+H+C++ CH GpC+ C+
  678302385 296 CGRHTCKRACHIGPCDACQ 314
                ******************7 PP
2zf-NF-X117.49.9e-06418435118
   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                CG H C + CH G+CppC
  678302385 418 CGLHHCPEVCHIGDCPPC 435
                ****************** PP
3zf-NF-X1193.1e-06514532119
   zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                CG+H+Cq+lCH G CppC 
  678302385 514 CGQHSCQSLCHSGHCPPCL 532
                ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.34E-7118189No hitNo description
PROSITE profilePS500168.929126187IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.671129185IPR001841Zinc finger, RING-type
PROSITE patternPS013590129184IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.62E-5218279No hitNo description
SMARTSM004380.29241259IPR000967Zinc finger, NF-X1-type
PfamPF014228.1243258IPR000967Zinc finger, NF-X1-type
CDDcd060084.26E-9286332No hitNo description
SMARTSM004380.0041296315IPR000967Zinc finger, NF-X1-type
PfamPF014227.8E-5296313IPR000967Zinc finger, NF-X1-type
CDDcd060081.41E-6350392No hitNo description
SMARTSM004380.066360379IPR000967Zinc finger, NF-X1-type
PfamPF014220.057360377IPR000967Zinc finger, NF-X1-type
CDDcd060085.76E-12408454No hitNo description
SMARTSM004386.3E-4418437IPR000967Zinc finger, NF-X1-type
PfamPF014220.0025418435IPR000967Zinc finger, NF-X1-type
SMARTSM0043848476506IPR000967Zinc finger, NF-X1-type
PfamPF0142215476487IPR000967Zinc finger, NF-X1-type
CDDcd060085.83E-9504556No hitNo description
SMARTSM004381.2E-4514533IPR000967Zinc finger, NF-X1-type
PfamPF014227.2E-5514531IPR000967Zinc finger, NF-X1-type
SMARTSM004380.22571589IPR000967Zinc finger, NF-X1-type
PfamPF0142242571588IPR000967Zinc finger, NF-X1-type
SMARTSM004380.39624654IPR000967Zinc finger, NF-X1-type
PfamPF014220.0081624639IPR000967Zinc finger, NF-X1-type
CDDcd060081.06E-4652701No hitNo description
PfamPF0142235656682IPR000967Zinc finger, NF-X1-type
SMARTSM004380.17663684IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3301.3E-4907952IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1084 aa     Download sequence    Send to blast
MSSTAQNSKR ENSYPRSRTN NSSQNIRQEW VPRGSAVPVL PRSIDNSTSN EDENGGPAVT  60
NRPVEPIISY SDRIATVSRG KIPHSVSQSE KEEKRNYTRL NKNKGFNAVN MPQLVQEIQD  120
KLLKGSVECM ICYEMVKRSS PIWSCSSCYS IFHLGCIKKW ARAPTSVDLL AEKNQGSNWR  180
CPGCQHVQLI SAKEIRYMCF CGKRQDPPSD LYLTPHSCGE PCGKALEKDP PGDGLVIEDM  240
CPHLCVLQCH PGPCPPCKAF APPRSCPCGK KTITTRCSDR RNALTCGQRC DKFLSCGRHT  300
CKRACHIGPC DACQDLIVAS CFCKKKTEVV LCRNMDFKGE FKSEAGVFSC GSVCDNKLEC  360
GNHVCCEVCH PGSCGVCDLL PGNIKTCCCG KTALSKERKT CLDPIPTCTQ TCGKILPCGL  420
HHCPEVCHIG DCPPCNALVT QECRCRSTSR TVECFRTLSE AESFTCDKPC EKKKSCGRHR  480
CSERCCPKSI PNNASLIDWD AHLCTIPCGK KLRCGQHSCQ SLCHSGHCPP CLETIFTDLT  540
CACGRTSIPP PLPCGTQPPS CQFPCSFPQS CGHPSSHTCH FGSCPPCSMP VSKECVGGHV  600
VLHNMPCGSK YIRCNKLCGK TRQCGLHACS RTCHEPPCDA SDESSSISQS SCGQVCGAPR  660
KDCRHTCTTL CHPSAPCPDV RCEFPVTITC NCGRISASVP CDAGANSANP DAVREASIIQ  720
RLPVSLVLLE GNGQRIPLGQ RKLMCDDECG RVERKKVLAD AFGVNPPSLD ALHFGENAAS  780
LPEVLSDLLR RDSKWVLSIE ERCRYLVVGR GRGGVSAPKV HVFCVMQKEK RDAVRLIAER  840
WKLSVNAAGW EPKRFVVVHV NSKSRAPARV LGMKSGTPST ILQPPIYDPM VDMDPRLVVA  900
LYDMPSDSDI SALVLRFGGE CELVWLNDRN ALAVFSDPAR AATAMRRLDQ GSVYYGAVTV  960
SQPSSSSAAA GTTAWGSTAS SKEVVAGSAW KKATVHDSAW KDGSLSAEEW SQNTSASVWK  1020
ESPTAAPVNQ WSVLQSRNSS VSSSSGSDIR NTLKQASNPY APLQKEDTKS EADDTFDDWE  1080
KAYD
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678302385
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083338.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2G9FWN90.0A0A2G9FWN9_9LAMI; Transcription factor NF-X1
STRINGMigut.D01221.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1