PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678301651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | C2H2 | ||||||||
Protein Properties | Length: 219aa MW: 23825.3 Da PI: 5.9035 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 21 | 44 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C C+++Fs+ L H+++ H 678301651 21 HVCRECDRRFSSGKALGGHMSRtH 44 79*******************988 PP | |||||||
2 | zf-C2H2 | 18.7 | 4.6e-06 | 71 | 92 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C+++F+++ +L+ H+r+H 678301651 71 VCNICHRVFNSRKSLHGHMRSH 92 6********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.12E-6 | 20 | 92 | No hit | No description |
SMART | SM00355 | 0.059 | 21 | 44 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.369 | 21 | 49 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.6E-9 | 21 | 44 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 23 | 44 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0097 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.452 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.0E-4 | 71 | 92 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.0E-7 | 72 | 94 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MKNLDEVQGS FDLGGEPSES HVCRECDRRF SSGKALGGHM SRTHAQGDDG RQKKRKLKIL 60 GRRDDSDEAA VCNICHRVFN SRKSLHGHMR SHPDRPWRGM DPEPKPASEA RSQMNDIDRI 120 DMIAAELLVN MRLGYYSTDS TVAGSSDESD SAGGVNSRIE TDTKAKKLDS CSSSLEADGY 180 LARVTAGDNL TAACGSTKFV IDLNVQASPE GGDSEDSFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 62 | KKRKLKILGRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678301651 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2050 | 22 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 9e-18 | C2H2 family protein |