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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678299172 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | C2H2 | ||||||||
Protein Properties | Length: 142aa MW: 14939.5 Da PI: 8.4787 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.00021 | 25 | 40 | 1 | 16 |
EEETTTTEEESSHHHH CS zf-C2H2 1 ykCpdCgksFsrksnL 16 y+C+ Cg+sF++ L 678299172 25 YRCGVCGRSFPTYQAL 40 9**********98877 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 67 | 89 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F++ L H r+H 678299172 67 HECSICHKDFPTGQALGGHKRKH 89 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.64E-7 | 21 | 52 | No hit | No description |
PROSITE profile | PS50157 | 11.655 | 25 | 52 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.1E-11 | 25 | 48 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.041 | 25 | 47 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 27 | 47 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.04E-5 | 64 | 91 | No hit | No description |
Pfam | PF13912 | 7.5E-12 | 67 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 67 | 89 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.058 | 67 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MAVDAAAAEW WASQTGNDVY DDQKYRCGVC GRSFPTYQAL GGHKTCHSNR KKSAVGVDPA 60 GKSRRGHECS ICHKDFPTGQ ALGGHKRKHY DRAVGGKVSS DGSGTSTVSY SGDGSYSGGA 120 VGKDFDLNLA PTPDLELKIS LG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678299172 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092508.1 | 2e-27 | zinc finger protein AZF2-like | ||||
Swissprot | Q42430 | 6e-25 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A2Z7BFJ9 | 4e-29 | A0A2Z7BFJ9_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 1e-21 | C2H2 family protein |